Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNHG11 (small nucleolar RNA host gene 11)

Identity

Alias_namesC20orf198
chromosome 20 open reading frame 198
small nucleolar RNA host gene 11 (non-protein coding)
Alias_symbol (synonym)LINC00101
Other aliasNCRNA00101
HGNC (Hugo) SNHG11
LocusID (NCBI) 128439
Atlas_Id 73639
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 38446654 and ends at 38450920 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNHG11 (20q11.23) / PARP10 (8q24.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG11   25046
Cards
Entrez_Gene (NCBI)SNHG11  128439  small nucleolar RNA host gene 11
AliasesC20orf198; LINC00101; NCRNA00101
GeneCards (Weizmann)SNHG11
Ensembl hg19 (Hinxton)ENSG00000174365 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000174365 [Gene_View]  chr20:38446654-38450920 [Contig_View]  SNHG11 [Vega]
ICGC DataPortalENSG00000174365
TCGA cBioPortalSNHG11
AceView (NCBI)SNHG11
Genatlas (Paris)SNHG11
WikiGenes128439
SOURCE (Princeton)SNHG11
Genetics Home Reference (NIH)SNHG11
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG11  -     chr20:38446654-38450920 +  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG11  -     20q11.23   [Description]    (hg19-Feb_2009)
EnsemblSNHG11 - 20q11.23 [CytoView hg19]  SNHG11 - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBISNHG11 [Mapview hg19]  SNHG11 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055434 BC040237
RefSeq transcript (Entrez)NM_139016
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG11
Cluster EST : UnigeneHs.16936 [ NCBI ]
CGAP (NCI)Hs.16936
Alternative Splicing GalleryENSG00000174365
Gene ExpressionSNHG11 [ NCBI-GEO ]   SNHG11 [ EBI - ARRAY_EXPRESS ]   SNHG11 [ SEEK ]   SNHG11 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG11 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)128439
GTEX Portal (Tissue expression)SNHG11
Human Protein AtlasENSG00000174365-SNHG11 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG11
DMDM Disease mutations128439
Blocks (Seattle)SNHG11
Human Protein Atlas [tissue]ENSG00000174365-SNHG11 [tissue]
HPRD11814
IPIIPI00982722   
Protein Interaction databases
FunCoupENSG00000174365
BioGRIDSNHG11
STRING (EMBL)SNHG11
ZODIACSNHG11
Ontologies - Pathways
Huge Navigator SNHG11 [HugePedia]
snp3D : Map Gene to Disease128439
BioCentury BCIQSNHG11
ClinGenSNHG11
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD128439
Chemical/Pharm GKB GenePA162404110
Clinical trialSNHG11
Miscellaneous
canSAR (ICR)SNHG11 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG11
EVEXSNHG11
GoPubMedSNHG11
iHOPSNHG11
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:28:21 CET 2017

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