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SNHG12 (small nucleolar RNA host gene 12)

Identity

Alias_namesC1orf79
chromosome 1 open reading frame 79
small nucleolar RNA host gene 12 (non-protein coding)
Alias_symbol (synonym)PNAS-123
LINC00100
ASLNC04080
Other aliasNCRNA00100
HGNC (Hugo) SNHG12
LocusID (NCBI) 85028
Atlas_Id 55593
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 28905055 and ends at 28908147 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SNHG12 (1p35.3) / SRRT (7q22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG12   30062
Cards
Entrez_Gene (NCBI)SNHG12  85028  small nucleolar RNA host gene 12
AliasesASLNC04080; C1orf79; LINC00100; NCRNA00100
GeneCards (Weizmann)SNHG12
Ensembl hg19 (Hinxton)ENSG00000197989 [Gene_View]  chr1:28905055-28908147 [Contig_View]  SNHG12 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197989 [Gene_View]  chr1:28905055-28908147 [Contig_View]  SNHG12 [Vega]
ICGC DataPortalENSG00000197989
TCGA cBioPortalSNHG12
AceView (NCBI)SNHG12
Genatlas (Paris)SNHG12
WikiGenes85028
SOURCE (Princeton)SNHG12
Genetics Home Reference (NIH)SNHG12
Genomic and cartography
GoldenPath hg19 (UCSC)SNHG12  -     chr1:28905055-28908147 -  1p35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNHG12  -     1p35.3   [Description]    (hg38-Dec_2013)
EnsemblSNHG12 - 1p35.3 [CytoView hg19]  SNHG12 - 1p35.3 [CytoView hg38]
Mapping of homologs : NCBISNHG12 [Mapview hg19]  SNHG12 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF277181 AK092096 AY277594 BC022205 BC034611
RefSeq transcript (Entrez)NM_053040
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)SNHG12
Cluster EST : UnigeneHs.632377 [ NCBI ]
CGAP (NCI)Hs.632377
Alternative Splicing GalleryENSG00000197989
Gene ExpressionSNHG12 [ NCBI-GEO ]   SNHG12 [ EBI - ARRAY_EXPRESS ]   SNHG12 [ SEEK ]   SNHG12 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85028
GTEX Portal (Tissue expression)SNHG12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BXW3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BXW3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BXW3
Splice isoforms : SwissVarQ9BXW3
PhosPhoSitePlusQ9BXW3
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG12
DMDM Disease mutations85028
Blocks (Seattle)SNHG12
SuperfamilyQ9BXW3
Human Protein AtlasENSG00000197989
Peptide AtlasQ9BXW3
IPIIPI00000497   
Protein Interaction databases
DIP (DOE-UCLA)Q9BXW3
IntAct (EBI)Q9BXW3
FunCoupENSG00000197989
BioGRIDSNHG12
STRING (EMBL)SNHG12
ZODIACSNHG12
Ontologies - Pathways
QuickGOQ9BXW3
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSNHG12
Atlas of Cancer Signalling NetworkSNHG12
Wikipedia pathwaysSNHG12
Orthology - Evolution
OrthoDB85028
GeneTree (enSembl)ENSG00000197989
Phylogenetic Trees/Animal Genes : TreeFamSNHG12
HOVERGENQ9BXW3
HOGENOMQ9BXW3
Homologs : HomoloGeneSNHG12
Homology/Alignments : Family Browser (UCSC)SNHG12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNHG12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNHG12
dbVarSNHG12
ClinVarSNHG12
1000_GenomesSNHG12 
Exome Variant ServerSNHG12
ExAC (Exome Aggregation Consortium)SNHG12 (select the gene name)
Genetic variants : HAPMAP85028
Genomic Variants (DGV)SNHG12 [DGVbeta]
DECIPHER (Syndromes)1:28905055-28908147  ENSG00000197989
CONAN: Copy Number AnalysisSNHG12 
Mutations
ICGC Data PortalSNHG12 
TCGA Data PortalSNHG12 
Broad Tumor PortalSNHG12
OASIS PortalSNHG12 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDSNHG12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNHG12
DgiDB (Drug Gene Interaction Database)SNHG12
DoCM (Curated mutations)SNHG12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNHG12 (select a term)
intoGenSNHG12
Cancer3DSNHG12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenSNHG12
Genetic Testing Registry SNHG12
NextProtQ9BXW3 [Medical]
TSGene85028
GENETestsSNHG12
Huge Navigator SNHG12 [HugePedia]
snp3D : Map Gene to Disease85028
BioCentury BCIQSNHG12
ClinGenSNHG12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85028
Chemical/Pharm GKB GenePA164725998
Clinical trialSNHG12
Miscellaneous
canSAR (ICR)SNHG12 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG12
EVEXSNHG12
GoPubMedSNHG12
iHOPSNHG12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 15:20:15 CEST 2017

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