Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNHG15 (small nucleolar RNA host gene 15)

Identity

Alias_namesC7orf40
chromosome 7 open reading frame 40
small nucleolar RNA host gene 15 (non-protein coding)
Alias_symbol (synonym)FLJ38860
MYO1GUT
Linc-Myo1g
Other alias
HGNC (Hugo) SNHG15
LocusID (NCBI) 285958
Atlas_Id 73641
Location 7p13  [Link to chromosome band 7p13]
Location_base_pair Starts at 45022627 and ends at 45026259 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SNHG15 (7p13) / SNHG15 (7p13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG15   27797
Cards
Entrez_Gene (NCBI)SNHG15  285958  small nucleolar RNA host gene 15
AliasesC7orf40; Linc-Myo1g; MYO1GUT
GeneCards (Weizmann)SNHG15
Ensembl hg19 (Hinxton)ENSG00000232956 [Gene_View]  chr7:45022627-45026259 [Contig_View]  SNHG15 [Vega]
Ensembl hg38 (Hinxton)ENSG00000232956 [Gene_View]  chr7:45022627-45026259 [Contig_View]  SNHG15 [Vega]
ICGC DataPortalENSG00000232956
TCGA cBioPortalSNHG15
AceView (NCBI)SNHG15
Genatlas (Paris)SNHG15
WikiGenes285958
SOURCE (Princeton)SNHG15
Genetics Home Reference (NIH)SNHG15
Genomic and cartography
GoldenPath hg19 (UCSC)SNHG15  -     chr7:45022627-45026259 -  7p13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNHG15  -     7p13   [Description]    (hg38-Dec_2013)
EnsemblSNHG15 - 7p13 [CytoView hg19]  SNHG15 - 7p13 [CytoView hg38]
Mapping of homologs : NCBISNHG15 [Mapview hg19]  SNHG15 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096179 BC092459 HG500230 HG500231 HG500232
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000007 NC_018918 NT_007819 NW_004929329
Consensus coding sequences : CCDS (NCBI)SNHG15
Cluster EST : UnigeneHs.25892 [ NCBI ]
CGAP (NCI)Hs.25892
Alternative Splicing GalleryENSG00000232956
Gene ExpressionSNHG15 [ NCBI-GEO ]   SNHG15 [ EBI - ARRAY_EXPRESS ]   SNHG15 [ SEEK ]   SNHG15 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG15 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)285958
GTEX Portal (Tissue expression)SNHG15
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG15
DMDM Disease mutations285958
Blocks (Seattle)SNHG15
Human Protein AtlasENSG00000232956
IPIIPI00843898   
Protein Interaction databases
FunCoupENSG00000232956
BioGRIDSNHG15
STRING (EMBL)SNHG15
ZODIACSNHG15
Ontologies - Pathways
Huge Navigator SNHG15 [HugePedia]
snp3D : Map Gene to Disease285958
BioCentury BCIQSNHG15
ClinGenSNHG15
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD285958
Chemical/Pharm GKB GenePA147358570
Clinical trialSNHG15
Miscellaneous
canSAR (ICR)SNHG15 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG15
EVEXSNHG15
GoPubMedSNHG15
iHOPSNHG15
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:28 CET 2017

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