Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNHG16 (small nucleolar RNA host gene 16)

Identity

Alias_namessmall nucleolar RNA host gene 16 (non-protein coding)
Alias_symbol (synonym)ncRAN
Other alias
HGNC (Hugo) SNHG16
LocusID (NCBI) 100507246
Atlas_Id 73642
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 74553846 and ends at 74561430 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG16   44352
Cards
Entrez_Gene (NCBI)SNHG16  100507246  small nucleolar RNA host gene 16
AliasesncRAN
GeneCards (Weizmann)SNHG16
Ensembl hg19 (Hinxton)ENSG00000163597 [Gene_View]  chr17:74553846-74561430 [Contig_View]  SNHG16 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163597 [Gene_View]  chr17:74553846-74561430 [Contig_View]  SNHG16 [Vega]
ICGC DataPortalENSG00000163597
TCGA cBioPortalSNHG16
AceView (NCBI)SNHG16
Genatlas (Paris)SNHG16
WikiGenes100507246
SOURCE (Princeton)SNHG16
Genetics Home Reference (NIH)SNHG16
Genomic and cartography
GoldenPath hg19 (UCSC)SNHG16  -     chr17:74553846-74561430 +  17q25.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNHG16  -     17q25.1   [Description]    (hg38-Dec_2013)
EnsemblSNHG16 - 17q25.1 [CytoView hg19]  SNHG16 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBISNHG16 [Mapview hg19]  SNHG16 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB073602 AB447886 AK024090 AK055935 AK129904
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)SNHG16
Cluster EST : UnigeneHs.288215 [ NCBI ]
CGAP (NCI)Hs.288215
Alternative Splicing GalleryENSG00000163597
Gene ExpressionSNHG16 [ NCBI-GEO ]   SNHG16 [ EBI - ARRAY_EXPRESS ]   SNHG16 [ SEEK ]   SNHG16 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507246
GTEX Portal (Tissue expression)SNHG16
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG16
DMDM Disease mutations100507246
Blocks (Seattle)SNHG16
Human Protein AtlasENSG00000163597
Protein Interaction databases
FunCoupENSG00000163597
BioGRIDSNHG16
STRING (EMBL)SNHG16
ZODIACSNHG16
Ontologies - Pathways
Huge Navigator SNHG16 [HugePedia]
snp3D : Map Gene to Disease100507246
BioCentury BCIQSNHG16
ClinGenSNHG16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507246
Clinical trialSNHG16
Miscellaneous
canSAR (ICR)SNHG16 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG16
EVEXSNHG16
GoPubMedSNHG16
iHOPSNHG16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:28 CET 2017

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