Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNHG17 (small nucleolar RNA host gene 17)

Identity

Alias_namessmall nucleolar RNA host gene 17 (non-protein coding)
Other alias-
HGNC (Hugo) SNHG17
LocusID (NCBI) 388796
Atlas_Id 73643
Location 20q11.23  [Link to chromosome band 20q11]
Location_base_pair Starts at 38420620 and ends at 38435319 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG17   48600
Cards
Entrez_Gene (NCBI)SNHG17  388796  small nucleolar RNA host gene 17
Aliases
GeneCards (Weizmann)SNHG17
Ensembl hg19 (Hinxton)ENSG00000196756 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196756 [Gene_View]  chr20:38420620-38435319 [Contig_View]  SNHG17 [Vega]
ICGC DataPortalENSG00000196756
TCGA cBioPortalSNHG17
AceView (NCBI)SNHG17
Genatlas (Paris)SNHG17
WikiGenes388796
SOURCE (Princeton)SNHG17
Genetics Home Reference (NIH)SNHG17
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG17  -     chr20:38420620-38435319 -  20q11.23   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG17  -     20q11.23   [Description]    (hg19-Feb_2009)
EnsemblSNHG17 - 20q11.23 [CytoView hg19]  SNHG17 - 20q11.23 [CytoView hg38]
Mapping of homologs : NCBISNHG17 [Mapview hg19]  SNHG17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK022745 BC012894 BC032119 BC052370 BM714185
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG17
Cluster EST : UnigeneHs.400876 [ NCBI ]
CGAP (NCI)Hs.400876
Alternative Splicing GalleryENSG00000196756
Gene ExpressionSNHG17 [ NCBI-GEO ]   SNHG17 [ EBI - ARRAY_EXPRESS ]   SNHG17 [ SEEK ]   SNHG17 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)388796
GTEX Portal (Tissue expression)SNHG17
Human Protein AtlasENSG00000196756-SNHG17 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG17
DMDM Disease mutations388796
Blocks (Seattle)SNHG17
Human Protein Atlas [tissue]ENSG00000196756-SNHG17 [tissue]
IPIIPI00883839   
Protein Interaction databases
FunCoupENSG00000196756
BioGRIDSNHG17
STRING (EMBL)SNHG17
ZODIACSNHG17
Ontologies - Pathways
Huge Navigator SNHG17 [HugePedia]
snp3D : Map Gene to Disease388796
BioCentury BCIQSNHG17
ClinGenSNHG17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD388796
Clinical trialSNHG17
Miscellaneous
canSAR (ICR)SNHG17 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG17
EVEXSNHG17
GoPubMedSNHG17
iHOPSNHG17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:28:22 CET 2017

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