Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNHG19 (small nucleolar RNA host gene 19)

Identity

Alias_namessmall nucleolar RNA host gene 19 (non-protein coding)
Alias_symbol (synonym)SNORD60HG
Other alias
HGNC (Hugo) SNHG19
LocusID (NCBI) 100507303
Atlas_Id 77745
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 2154782 and ends at 2155358 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG19   49574
Cards
Entrez_Gene (NCBI)SNHG19  100507303  small nucleolar RNA host gene 19
AliasesSNORD60HG
GeneCards (Weizmann)SNHG19
Ensembl hg19 (Hinxton)ENSG00000260260 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000260260 [Gene_View]  chr16:2154782-2155358 [Contig_View]  SNHG19 [Vega]
ICGC DataPortalENSG00000260260
TCGA cBioPortalSNHG19
AceView (NCBI)SNHG19
Genatlas (Paris)SNHG19
WikiGenes100507303
SOURCE (Princeton)SNHG19
Genetics Home Reference (NIH)SNHG19
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG19  -     chr16:2154782-2155358 -  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG19  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblSNHG19 - 16p13.3 [CytoView hg19]  SNHG19 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBISNHG19 [Mapview hg19]  SNHG19 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA535774 BM856089 DA194369
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG19
Cluster EST : UnigeneHs.369728 [ NCBI ]
CGAP (NCI)Hs.369728
Alternative Splicing GalleryENSG00000260260
Gene ExpressionSNHG19 [ NCBI-GEO ]   SNHG19 [ EBI - ARRAY_EXPRESS ]   SNHG19 [ SEEK ]   SNHG19 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG19 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100507303
GTEX Portal (Tissue expression)SNHG19
Human Protein AtlasENSG00000260260-SNHG19 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG19
DMDM Disease mutations100507303
Blocks (Seattle)SNHG19
Human Protein Atlas [tissue]ENSG00000260260-SNHG19 [tissue]
Protein Interaction databases
FunCoupENSG00000260260
BioGRIDSNHG19
STRING (EMBL)SNHG19
ZODIACSNHG19
Ontologies - Pathways
Huge Navigator SNHG19 [HugePedia]
snp3D : Map Gene to Disease100507303
BioCentury BCIQSNHG19
ClinGenSNHG19
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100507303
Clinical trialSNHG19
Miscellaneous
canSAR (ICR)SNHG19 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG19
EVEXSNHG19
GoPubMedSNHG19
iHOPSNHG19
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:34:22 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.