Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNHG20 (small nucleolar RNA host gene 20)

Identity

Alias_namesC17orf86
NCRNA00338
LINC00338
chromosome 17 open reading frame 86
non-protein coding RNA 338
long intergenic non-protein coding RNA 338
small nucleolar RNA host gene 20 (non-protein coding)
Alias_symbol (synonym)PRO0872
FLJ25582
DKFZp686L05235
SCARNA16HG
Other alias
HGNC (Hugo) SNHG20
LocusID (NCBI) 654434
Atlas_Id 73645
Location 17q25.2  [Link to chromosome band 17q25]
Location_base_pair Starts at 75084725 and ends at 75091068 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CD82 (11p11.2) / SNHG20 (17q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG20   33099
Cards
Entrez_Gene (NCBI)SNHG20  654434  small nucleolar RNA host gene 20
AliasesC17orf86; LINC00338; NCRNA00338; SCARNA16HG
GeneCards (Weizmann)SNHG20
Ensembl hg19 (Hinxton)ENSG00000234912 [Gene_View]  chr17:75084725-75091068 [Contig_View]  SNHG20 [Vega]
Ensembl hg38 (Hinxton)ENSG00000234912 [Gene_View]  chr17:75084725-75091068 [Contig_View]  SNHG20 [Vega]
ICGC DataPortalENSG00000234912
TCGA cBioPortalSNHG20
AceView (NCBI)SNHG20
Genatlas (Paris)SNHG20
WikiGenes654434
SOURCE (Princeton)SNHG20
Genetics Home Reference (NIH)SNHG20
Genomic and cartography
GoldenPath hg19 (UCSC)SNHG20  -     chr17:75084725-75091068 +  17q25.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNHG20  -     17q25.2   [Description]    (hg38-Dec_2013)
EnsemblSNHG20 - 17q25.2 [CytoView hg19]  SNHG20 - 17q25.2 [CytoView hg38]
Mapping of homologs : NCBISNHG20 [Mapview hg19]  SNHG20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF130050 AK098448 BX648413 DA068554 DA916381
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000017 NC_018928 NT_010783 NW_004929407
Consensus coding sequences : CCDS (NCBI)SNHG20
Cluster EST : UnigeneHs.720923 [ NCBI ]
CGAP (NCI)Hs.720923
Alternative Splicing GalleryENSG00000234912
Gene ExpressionSNHG20 [ NCBI-GEO ]   SNHG20 [ EBI - ARRAY_EXPRESS ]   SNHG20 [ SEEK ]   SNHG20 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)654434
GTEX Portal (Tissue expression)SNHG20
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG20
DMDM Disease mutations654434
Blocks (Seattle)SNHG20
Human Protein AtlasENSG00000234912
Protein Interaction databases
FunCoupENSG00000234912
BioGRIDSNHG20
STRING (EMBL)SNHG20
ZODIACSNHG20
Ontologies - Pathways
Huge Navigator SNHG20 [HugePedia]
snp3D : Map Gene to Disease654434
BioCentury BCIQSNHG20
ClinGenSNHG20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD654434
Chemical/Pharm GKB GenePA147358439
Clinical trialSNHG20
Miscellaneous
canSAR (ICR)SNHG20 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG20
EVEXSNHG20
GoPubMedSNHG20
iHOPSNHG20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:29 CET 2017

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