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SNHG20 (small nucleolar RNA host gene 20)

Identity

Other aliasC17orf86
LINC00338
NCRNA00338
SCARNA16HG
HGNC (Hugo) SNHG20
LocusID (NCBI) 654434
Atlas_Id 57085
Location 17q25.2  [Link to chromosome band 17q25]
Location_base_pair Starts at 77089221 and ends at 77094986 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CD82 (11p11.2) / SNHG20 (17q25.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG20   33099
Cards
Entrez_Gene (NCBI)SNHG20  654434  small nucleolar RNA host gene 20
AliasesC17orf86; LINC00338; NCRNA00338; SCARNA16HG
GeneCards (Weizmann)SNHG20
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr17:77089221-77094986 [Contig_View]  SNHG20 [Vega]
TCGA cBioPortalSNHG20
AceView (NCBI)SNHG20
Genatlas (Paris)SNHG20
WikiGenes654434
SOURCE (Princeton)SNHG20
Genetics Home Reference (NIH)SNHG20
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG20  -     chr17:77089221-77094986 +  17q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG20  -     17q25.2   [Description]    (hg19-Feb_2009)
EnsemblSNHG20 - 17q25.2 [CytoView hg19]  SNHG20 - 17q25.2 [CytoView hg38]
Mapping of homologs : NCBISNHG20 [Mapview hg19]  SNHG20 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF130050 AK098448 BX648413 DA068554 DA916381
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG20
Cluster EST : UnigeneHs.720923 [ NCBI ]
CGAP (NCI)Hs.720923
Gene ExpressionSNHG20 [ NCBI-GEO ]   SNHG20 [ EBI - ARRAY_EXPRESS ]   SNHG20 [ SEEK ]   SNHG20 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG20 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)654434
GTEX Portal (Tissue expression)SNHG20
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG20
DMDM Disease mutations654434
Blocks (Seattle)SNHG20
Protein Interaction databases
BioGRIDSNHG20
STRING (EMBL)SNHG20
ZODIACSNHG20
Ontologies - Pathways
Huge Navigator SNHG20 [HugePedia]
snp3D : Map Gene to Disease654434
BioCentury BCIQSNHG20
ClinGenSNHG20
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD654434
Chemical/Pharm GKB GenePA147358439
Clinical trialSNHG20
Miscellaneous
canSAR (ICR)SNHG20 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG20
EVEXSNHG20
GoPubMedSNHG20
iHOPSNHG20
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:11:57 CET 2017

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