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SNHG21 (small nucleolar RNA host gene 21)

Identity

Alias_namessmall nucleolar RNA host gene 21 (non-protein coding)
Alias_symbol (synonym)SCARNA15HG
FSD2-AS1
RP11-752G15.6
Other alias
HGNC (Hugo) SNHG21
LocusID (NCBI) 100505616
Atlas_Id 73646
Location 15q25.2  [Link to chromosome band 15q25]
Location_base_pair Starts at 82750564 and ends at 82757206 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG21   50284
Cards
Entrez_Gene (NCBI)SNHG21  100505616  small nucleolar RNA host gene 21
AliasesFSD2-AS1; SCARNA15HG
GeneCards (Weizmann)SNHG21
Ensembl hg19 (Hinxton)ENSG00000250988 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000250988 [Gene_View]  chr15:82750564-82757206 [Contig_View]  SNHG21 [Vega]
ICGC DataPortalENSG00000250988
TCGA cBioPortalSNHG21
AceView (NCBI)SNHG21
Genatlas (Paris)SNHG21
WikiGenes100505616
SOURCE (Princeton)SNHG21
Genetics Home Reference (NIH)SNHG21
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG21  -     chr15:82750564-82757206 +  15q25.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG21  -     15q25.2   [Description]    (hg19-Feb_2009)
EnsemblSNHG21 - 15q25.2 [CytoView hg19]  SNHG21 - 15q25.2 [CytoView hg38]
Mapping of homologs : NCBISNHG21 [Mapview hg19]  SNHG21 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA284521 AL360137 BX112407 CF129490 CK904397
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG21
Cluster EST : UnigeneHs.733986 [ NCBI ]
CGAP (NCI)Hs.733986
Alternative Splicing GalleryENSG00000250988
Gene ExpressionSNHG21 [ NCBI-GEO ]   SNHG21 [ EBI - ARRAY_EXPRESS ]   SNHG21 [ SEEK ]   SNHG21 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100505616
GTEX Portal (Tissue expression)SNHG21
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG21
DMDM Disease mutations100505616
Blocks (Seattle)SNHG21
Human Protein AtlasENSG00000250988
Protein Interaction databases
FunCoupENSG00000250988
BioGRIDSNHG21
STRING (EMBL)SNHG21
ZODIACSNHG21
Ontologies - Pathways
Huge Navigator SNHG21 [HugePedia]
snp3D : Map Gene to Disease100505616
BioCentury BCIQSNHG21
ClinGenSNHG21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100505616
Clinical trialSNHG21
Miscellaneous
canSAR (ICR)SNHG21 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG21
EVEXSNHG21
GoPubMedSNHG21
iHOPSNHG21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 1 16:39:24 CEST 2017

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