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SNHG22 (small nucleolar RNA host gene 22)

Identity

Alias_namessmall nucleolar RNA host gene 22 (non-protein coding)
Alias_symbol (synonym)SCARNA17HG
Other aliasSCARNA17
HGNC (Hugo) SNHG22
LocusID (NCBI) 103091864
Atlas_Id 73647
Location 18q21.1  [Link to chromosome band 18q21]
Location_base_pair Starts at 49814023 and ends at 49851059 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG22   50285
Cards
Entrez_Gene (NCBI)SNHG22  103091864  small nucleolar RNA host gene 22
AliasesSCARNA17; SCARNA17HG
GeneCards (Weizmann)SNHG22
Ensembl hg19 (Hinxton)ENSG00000267322 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267322 [Gene_View]  chr18:49814023-49851059 [Contig_View]  SNHG22 [Vega]
ICGC DataPortalENSG00000267322
TCGA cBioPortalSNHG22
AceView (NCBI)SNHG22
Genatlas (Paris)SNHG22
WikiGenes103091864
SOURCE (Princeton)SNHG22
Genetics Home Reference (NIH)SNHG22
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG22  -     chr18:49814023-49851059 +  18q21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG22  -     18q21.1   [Description]    (hg19-Feb_2009)
EnsemblSNHG22 - 18q21.1 [CytoView hg19]  SNHG22 - 18q21.1 [CytoView hg38]
Mapping of homologs : NCBISNHG22 [Mapview hg19]  SNHG22 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123464
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG22
Cluster EST : UnigeneHs.646459 [ NCBI ]
CGAP (NCI)Hs.646459
Alternative Splicing GalleryENSG00000267322
Gene ExpressionSNHG22 [ NCBI-GEO ]   SNHG22 [ EBI - ARRAY_EXPRESS ]   SNHG22 [ SEEK ]   SNHG22 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG22 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)103091864
GTEX Portal (Tissue expression)SNHG22
Human Protein AtlasENSG00000267322-SNHG22 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG22
DMDM Disease mutations103091864
Blocks (Seattle)SNHG22
Human Protein Atlas [tissue]ENSG00000267322-SNHG22 [tissue]
Protein Interaction databases
FunCoupENSG00000267322
BioGRIDSNHG22
STRING (EMBL)SNHG22
ZODIACSNHG22
Ontologies - Pathways
Huge Navigator SNHG22 [HugePedia]
snp3D : Map Gene to Disease103091864
BioCentury BCIQSNHG22
ClinGenSNHG22
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD103091864
Clinical trialSNHG22
Miscellaneous
canSAR (ICR)SNHG22 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG22
EVEXSNHG22
GoPubMedSNHG22
iHOPSNHG22
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:37:57 CET 2017

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