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SNHG27 (small nucleolar RNA host gene 27)

Identity

Other alias-
HGNC (Hugo) SNHG27
LocusID (NCBI) 101927305
Atlas_Id 79671
Location 4q28.3  [Link to chromosome band 4q28]
Location_base_pair Starts at 131764838 and ends at 131774899 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SNHG27   53481
Cards
Entrez_Gene (NCBI)SNHG27  101927305  small nucleolar RNA host gene 27
Aliases
GeneCards (Weizmann)SNHG27
Ensembl hg19 (Hinxton)ENSG00000251676 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000251676 [Gene_View]  ENSG00000251676 [Sequence]  chr4:131764838-131774899 [Contig_View]  SNHG27 [Vega]
ICGC DataPortalENSG00000251676
TCGA cBioPortalSNHG27
AceView (NCBI)SNHG27
Genatlas (Paris)SNHG27
WikiGenes101927305
SOURCE (Princeton)SNHG27
Genetics Home Reference (NIH)SNHG27
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG27  -     chr4:131764838-131774899 +  4q28.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG27  -     4q28.3   [Description]    (hg19-Feb_2009)
EnsemblSNHG27 - 4q28.3 [CytoView hg19]  SNHG27 - 4q28.3 [CytoView hg38]
Mapping of homologs : NCBISNHG27 [Mapview hg19]  SNHG27 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AW510858 CR738916 DB459344 DB524813
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG27
Cluster EST : UnigeneHs.507924 [ NCBI ]
CGAP (NCI)Hs.507924
Alternative Splicing GalleryENSG00000251676
Gene ExpressionSNHG27 [ NCBI-GEO ]   SNHG27 [ EBI - ARRAY_EXPRESS ]   SNHG27 [ SEEK ]   SNHG27 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG27 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)101927305
GTEX Portal (Tissue expression)SNHG27
Human Protein AtlasENSG00000251676-SNHG27 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG27
DMDM Disease mutations101927305
Blocks (Seattle)SNHG27
Human Protein Atlas [tissue]ENSG00000251676-SNHG27 [tissue]
Protein Interaction databases
FunCoupENSG00000251676
BioGRIDSNHG27
STRING (EMBL)SNHG27
ZODIACSNHG27
Ontologies - Pathways
Huge Navigator SNHG27 [HugePedia]
snp3D : Map Gene to Disease101927305
BioCentury BCIQSNHG27
ClinGenSNHG27
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD101927305
Clinical trialSNHG27
Miscellaneous
canSAR (ICR)SNHG27 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG27
EVEXSNHG27
GoPubMedSNHG27
iHOPSNHG27
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:30:21 CEST 2018

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