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SNHG28 (small nucleolar RNA host gene 28)

Identity

Alias_namesC1orf204
chromosome 1 open reading frame 204
Alias_symbol (synonym)FLJ39187
VSIG8-OT1
Other alias
HGNC (Hugo) SNHG28
LocusID (NCBI) 284677
Atlas_Id 79364
Location 1q23.2  [Link to chromosome band 1q23]
Location_base_pair Starts at 159834474 and ends at 159855347 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SNHG28   27647
Cards
Entrez_Gene (NCBI)SNHG28  284677  small nucleolar RNA host gene 28
AliasesC1orf204; VSIG8-OT1
GeneCards (Weizmann)SNHG28
Ensembl hg19 (Hinxton)ENSG00000188004 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000188004 [Gene_View]  chr1:159834474-159855347 [Contig_View]  SNHG28 [Vega]
ICGC DataPortalENSG00000188004
TCGA cBioPortalSNHG28
AceView (NCBI)SNHG28
Genatlas (Paris)SNHG28
WikiGenes284677
SOURCE (Princeton)SNHG28
Genetics Home Reference (NIH)SNHG28
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG28  -     chr1:159834474-159855347 -  1q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG28  -     1q23.2   [Description]    (hg19-Feb_2009)
EnsemblSNHG28 - 1q23.2 [CytoView hg19]  SNHG28 - 1q23.2 [CytoView hg38]
Mapping of homologs : NCBISNHG28 [Mapview hg19]  SNHG28 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096506 AL080176 AL537381 BI753917 DA288133
RefSeq transcript (Entrez)NM_001134233
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG28
Cluster EST : UnigeneHs.647718 [ NCBI ]
CGAP (NCI)Hs.647718
Alternative Splicing GalleryENSG00000188004
Gene ExpressionSNHG28 [ NCBI-GEO ]   SNHG28 [ EBI - ARRAY_EXPRESS ]   SNHG28 [ SEEK ]   SNHG28 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)284677
GTEX Portal (Tissue expression)SNHG28
Human Protein AtlasENSG00000188004-SNHG28 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG28
DMDM Disease mutations284677
Blocks (Seattle)SNHG28
Human Protein Atlas [tissue]ENSG00000188004-SNHG28 [tissue]
IPIIPI00376274   IPI00479090   
Protein Interaction databases
FunCoupENSG00000188004
BioGRIDSNHG28
STRING (EMBL)SNHG28
ZODIACSNHG28
Ontologies - Pathways
Huge Navigator SNHG28 [HugePedia]
snp3D : Map Gene to Disease284677
BioCentury BCIQSNHG28
ClinGenSNHG28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD284677
Chemical/Pharm GKB GenePA142672405
Clinical trialSNHG28
Miscellaneous
canSAR (ICR)SNHG28 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG28
EVEXSNHG28
GoPubMedSNHG28
iHOPSNHG28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:03:00 CET 2017

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