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SNHG3 (small nucleolar RNA host gene 3)

Identity

Alias_namesRNU17D
RNU17C
RNA, U17D small nucleolar
RNA, U17C small nucleolar
small nucleolar RNA host gene 3 (non-protein coding)
Alias_symbol (synonym)U17HG
U17HG-A
NCRNA00014
Other aliasU17HG-AB
HGNC (Hugo) SNHG3
LocusID (NCBI) 8420
Atlas_Id 73649
Location 1p35.3  [Link to chromosome band 1p35]
Location_base_pair Starts at 28832455 and ends at 28837404 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CANX (5q35.3) / SNHG3 (1p35.3)IDS (Xq28) / SNHG3 (1p35.3)SNHG3 (1p35.3) / AIFM1 (Xq26.1)
SNHG3 (1p35.3) / ASF1B (19p13.12)SNHG3 (1p35.3) / CUL2 (10p11.21)SNHG3 (1p35.3) / DROSHA (5p13.3)
SNHG3 (1p35.3) / GNB1 (1p36.33)SNHG3 (1p35.3) / LRBA (4q31.3)SNHG3 (1p35.3) / NSMCE2 (8q24.13)
SNHG3 (1p35.3) / PARL (3q27.1)SNHG3 (1p35.3) / PPP1R3B (8p23.1)SNHG3 (1p35.3) / RCC1 (1p35.3)
SNHG3 (1p35.3) / STK3 (8q22.2)SNHG3 (1p35.3) / TMEM167A (5q14.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG3   10118
Cards
Entrez_Gene (NCBI)SNHG3  8420  small nucleolar RNA host gene 3
AliasesNCRNA00014; RNU17C; RNU17D; U17HG; 
U17HG-A; U17HG-AB
GeneCards (Weizmann)SNHG3
Ensembl hg19 (Hinxton)ENSG00000242125 [Gene_View]  chr1:28832455-28837404 [Contig_View]  SNHG3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000242125 [Gene_View]  chr1:28832455-28837404 [Contig_View]  SNHG3 [Vega]
ICGC DataPortalENSG00000242125
TCGA cBioPortalSNHG3
AceView (NCBI)SNHG3
Genatlas (Paris)SNHG3
WikiGenes8420
SOURCE (Princeton)SNHG3
Genetics Home Reference (NIH)SNHG3
Genomic and cartography
GoldenPath hg19 (UCSC)SNHG3  -     chr1:28832455-28837404 +  1p35.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNHG3  -     1p35.3   [Description]    (hg38-Dec_2013)
EnsemblSNHG3 - 1p35.3 [CytoView hg19]  SNHG3 - 1p35.3 [CytoView hg38]
Mapping of homologs : NCBISNHG3 [Mapview hg19]  SNHG3 [Mapview hg38]
OMIM603238   
Gene and transcription
Genbank (Entrez)AF075052 AJ006834 AJ006835 AK092726 AK311577
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929289
Consensus coding sequences : CCDS (NCBI)SNHG3
Cluster EST : UnigeneHs.469723 [ NCBI ]
CGAP (NCI)Hs.469723
Alternative Splicing GalleryENSG00000242125
Gene ExpressionSNHG3 [ NCBI-GEO ]   SNHG3 [ EBI - ARRAY_EXPRESS ]   SNHG3 [ SEEK ]   SNHG3 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)8420
GTEX Portal (Tissue expression)SNHG3
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG3
DMDM Disease mutations8420
Blocks (Seattle)SNHG3
Human Protein AtlasENSG00000242125
Protein Interaction databases
FunCoupENSG00000242125
BioGRIDSNHG3
STRING (EMBL)SNHG3
ZODIACSNHG3
Ontologies - Pathways
Huge Navigator SNHG3 [HugePedia]
snp3D : Map Gene to Disease8420
BioCentury BCIQSNHG3
ClinGenSNHG3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8420
Chemical/Pharm GKB GenePA34484
Clinical trialSNHG3
Miscellaneous
canSAR (ICR)SNHG3 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG3
EVEXSNHG3
GoPubMedSNHG3
iHOPSNHG3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:44:30 CET 2017

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