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SNHG32 (chromosome 6 open reading frame 48)

Identity

Alias_symbol (synonym)D6S57
G8
Other alias
HGNC (Hugo) SNHG32
LocusID (NCBI) 50854
Atlas_Id 53559
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31834915 and ends at 31839766 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute


External links

Nomenclature
HGNC (Hugo)SNHG32   19078
Cards
Entrez_Gene (NCBI)SNHG32  50854  chromosome 6 open reading frame 48
AliasesD6S57; G8
GeneCards (Weizmann)SNHG32
Ensembl hg19 (Hinxton)ENSG00000204387 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000204387 [Gene_View]  ENSG00000204387 [Sequence]  chr6:31834915-31839766 [Contig_View]  SNHG32 [Vega]
ICGC DataPortalENSG00000204387
TCGA cBioPortalSNHG32
AceView (NCBI)SNHG32
Genatlas (Paris)SNHG32
WikiGenes50854
SOURCE (Princeton)SNHG32
Genetics Home Reference (NIH)SNHG32
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG32  -     chr6:31834915-31839766 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG32  -     6p21.33   [Description]    (hg19-Feb_2009)
SNHG32 - 6p21.33 [CytoView hg19]  SNHG32 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBISNHG32 [Mapview hg19]  SNHG32 [Mapview hg38]
OMIM605447   
Gene and transcription
Genbank (Entrez)AA720680 AJ249731 AJ249731 AJ249732 AK311989
RefSeq transcript (Entrez)NM_001040437 NM_001040438 NM_001287482 NM_001287483 NM_001287484 NM_001287485 NM_001287486 NM_001287487 NM_001287488 NM_016947
RefSeq genomic (Entrez)NC_000006 NT_113891 NT_167244 NT_167245 NT_167248
Consensus coding sequences : CCDS (NCBI)SNHG32
Cluster EST : UnigeneHs.714250 [ NCBI ]
CGAP (NCI)Hs.714250
Alternative Splicing GalleryENSG00000204387
Gene ExpressionSNHG32 [ NCBI-GEO ]   SNHG32 [ EBI - ARRAY_EXPRESS ]   SNHG32 [ SEEK ]   SNHG32 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG32 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)50854
GTEX Portal (Tissue expression)SNHG32
Human Protein AtlasENSG00000204387-SNHG32 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBA6   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBA6  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBA6
Splice isoforms : SwissVarQ9UBA6
PhosPhoSitePlusQ9UBA6
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG32
DMDM Disease mutations50854
Blocks (Seattle)SNHG32
SuperfamilyQ9UBA6
Human Protein Atlas [tissue]ENSG00000204387-SNHG32 [tissue]
Peptide AtlasQ9UBA6
HPRD12015
IPIIPI00383662   IPI01018684   IPI01010488   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBA6
IntAct (EBI)Q9UBA6
FunCoupENSG00000204387
BioGRIDSNHG32
STRING (EMBL)SNHG32
ZODIACSNHG32
Ontologies - Pathways
QuickGOQ9UBA6
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkSNHG32
Atlas of Cancer Signalling NetworkSNHG32
Wikipedia pathwaysSNHG32
Orthology - Evolution
OrthoDB50854
GeneTree (enSembl)ENSG00000204387
Phylogenetic Trees/Animal Genes : TreeFamSNHG32
HOGENOMQ9UBA6
Homologs : HomoloGeneSNHG32
Homology/Alignments : Family Browser (UCSC)SNHG32
Gene fusions - Rearrangements
Fusion : QuiverSNHG32
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNHG32 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNHG32
dbVarSNHG32
ClinVarSNHG32
1000_GenomesSNHG32 
Exome Variant ServerSNHG32
ExAC (Exome Aggregation Consortium)ENSG00000204387
GNOMAD BrowserENSG00000204387
Varsome BrowserSNHG32
Genetic variants : HAPMAP50854
Genomic Variants (DGV)SNHG32 [DGVbeta]
DECIPHERSNHG32 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNHG32 
Mutations
ICGC Data PortalSNHG32 
TCGA Data PortalSNHG32 
Broad Tumor PortalSNHG32
OASIS PortalSNHG32 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNHG32  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNHG32
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNHG32
DgiDB (Drug Gene Interaction Database)SNHG32
DoCM (Curated mutations)SNHG32 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNHG32 (select a term)
intoGenSNHG32
Cancer3DSNHG32(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605447   
Orphanet
DisGeNETSNHG32
MedgenSNHG32
Genetic Testing Registry SNHG32
NextProtQ9UBA6 [Medical]
TSGene50854
GENETestsSNHG32
Target ValidationSNHG32
Huge Navigator SNHG32 [HugePedia]
snp3D : Map Gene to Disease50854
BioCentury BCIQSNHG32
ClinGenSNHG32
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD50854
Chemical/Pharm GKB GenePA38786
Clinical trialSNHG32
Miscellaneous
canSAR (ICR)SNHG32 (select the gene name)
DataMed IndexSNHG32
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG32
EVEXSNHG32
GoPubMedSNHG32
iHOPSNHG32
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu May 2 13:11:27 CEST 2019

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