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SNHG4 (small nucleolar RNA host gene 4)

Identity

Alias_namessmall nucleolar RNA host gene 4 (non-protein coding)
Alias_symbol (synonym)U19H
NCRNA00059
Other alias
HGNC (Hugo) SNHG4
LocusID (NCBI) 724102
Atlas_Id 73650
Location 5q31.2  [Link to chromosome band 5q31]
Location_base_pair Starts at 139273752 and ends at 139279628 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNHG4 (5q31.2) / MATR3 (5q31.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG4   32964
Cards
Entrez_Gene (NCBI)SNHG4  724102  small nucleolar RNA host gene 4
AliasesNCRNA00059; U19H
GeneCards (Weizmann)SNHG4
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr5:139273752-139279628 [Contig_View]  SNHG4 [Vega]
TCGA cBioPortalSNHG4
AceView (NCBI)SNHG4
Genatlas (Paris)SNHG4
WikiGenes724102
SOURCE (Princeton)SNHG4
Genetics Home Reference (NIH)SNHG4
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG4  -     chr5:139273752-139279628 +  5q31.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG4  -     5q31.2   [Description]    (hg19-Feb_2009)
EnsemblSNHG4 - 5q31.2 [CytoView hg19]  SNHG4 - 5q31.2 [CytoView hg38]
Mapping of homologs : NCBISNHG4 [Mapview hg19]  SNHG4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ224167 AJ224168 AJ224170 CN337312 DA203569
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG4
Cluster EST : UnigeneHs.268939 [ NCBI ]
CGAP (NCI)Hs.268939
Gene ExpressionSNHG4 [ NCBI-GEO ]   SNHG4 [ EBI - ARRAY_EXPRESS ]   SNHG4 [ SEEK ]   SNHG4 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)724102
GTEX Portal (Tissue expression)SNHG4
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG4
DMDM Disease mutations724102
Blocks (Seattle)SNHG4
Protein Interaction databases
BioGRIDSNHG4
STRING (EMBL)SNHG4
ZODIACSNHG4
Ontologies - Pathways
Huge Navigator SNHG4 [HugePedia]
snp3D : Map Gene to Disease724102
BioCentury BCIQSNHG4
ClinGenSNHG4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD724102
Chemical/Pharm GKB GenePA147357290
Clinical trialSNHG4
Miscellaneous
canSAR (ICR)SNHG4 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG4
EVEXSNHG4
GoPubMedSNHG4
iHOPSNHG4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:38:43 CEST 2017

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