Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNHG5 (small nucleolar RNA host gene 5)

Identity

Alias_namesC6orf160
chromosome 6 open reading frame 160
small nucleolar RNA host gene 5 (non-protein coding)
Alias_symbol (synonym)MGC16362
bA33E24.2
U50HG
NCRNA00044
LINC00044
Other alias
HGNC (Hugo) SNHG5
LocusID (NCBI) 387066
Atlas_Id 44027
Location 6q14.3  [Link to chromosome band 6q14]
Location_base_pair Starts at 85677007 and ends at 85678733 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNHG5 (6q14.3) / ADAMDEC1 (8p21.2)SNHG5 (6q14.3) / BCL6 (3q27.3)SNHG5 (6q14.3) / HEY1 (8q21.13)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

Other Leukemias implicated (Data extracted from papers in the Atlas) [ 2 ]
  t(3;6)(q27;q14) SNHG5/BCL6
t(6;6)(q14;q14) SNHG5/SNX14

External links

Nomenclature
HGNC (Hugo)SNHG5   21026
Cards
Entrez_Gene (NCBI)SNHG5  387066  small nucleolar RNA host gene 5
AliasesC6orf160; LINC00044; NCRNA00044; U50HG
GeneCards (Weizmann)SNHG5
Ensembl hg19 (Hinxton)ENSG00000203875 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203875 [Gene_View]  ENSG00000203875 [Sequence]  chr6:85677007-85678733 [Contig_View]  SNHG5 [Vega]
ICGC DataPortalENSG00000203875
TCGA cBioPortalSNHG5
AceView (NCBI)SNHG5
Genatlas (Paris)SNHG5
WikiGenes387066
SOURCE (Princeton)SNHG5
Genetics Home Reference (NIH)SNHG5
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG5  -     chr6:85677007-85678733 -  6q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG5  -     6q14.3   [Description]    (hg19-Feb_2009)
EnsemblSNHG5 - 6q14.3 [CytoView hg19]  SNHG5 - 6q14.3 [CytoView hg38]
Mapping of homologs : NCBISNHG5 [Mapview hg19]  SNHG5 [Mapview hg38]
OMIM613263   
Gene and transcription
Genbank (Entrez)AK311192 BC009220 BC108291 CD384894 CD388674
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG5
Cluster EST : UnigeneHs.292457 [ NCBI ]
CGAP (NCI)Hs.292457
Alternative Splicing GalleryENSG00000203875
Gene ExpressionSNHG5 [ NCBI-GEO ]   SNHG5 [ EBI - ARRAY_EXPRESS ]   SNHG5 [ SEEK ]   SNHG5 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)387066
GTEX Portal (Tissue expression)SNHG5
Human Protein AtlasENSG00000203875-SNHG5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG5
DMDM Disease mutations387066
Blocks (Seattle)SNHG5
Human Protein Atlas [tissue]ENSG00000203875-SNHG5 [tissue]
IPIIPI00514465   
Protein Interaction databases
FunCoupENSG00000203875
BioGRIDSNHG5
STRING (EMBL)SNHG5
ZODIACSNHG5
Ontologies - Pathways
Huge Navigator SNHG5 [HugePedia]
snp3D : Map Gene to Disease387066
BioCentury BCIQSNHG5
ClinGenSNHG5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387066
Chemical/Pharm GKB GenePA134922440
Clinical trialSNHG5
Miscellaneous
canSAR (ICR)SNHG5 (select the gene name)
DataMed IndexSNHG5
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG5
EVEXSNHG5
GoPubMedSNHG5
iHOPSNHG5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Jan 17 18:39:22 CET 2019
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.