Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNHG6 (small nucleolar RNA host gene 6)

Identity

Other aliasHBII-276HG
NCRNA00058
U87HG
HGNC (Hugo) SNHG6
LocusID (NCBI) 641638
Atlas_Id 57169
Location 8q13.1  [Link to chromosome band 8q13]
Location_base_pair Starts at 66921995 and ends at 66925541 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNHG6 (8q13.1) / CPE (4q32.3)SNHG6 (8q13.1) / NDUFV1 (11q13.2)SNHG6 (8q13.1) / NQO1 (16q22.1)
SNHG6 (8q13.1) / SET (9q34.11)SNHG6 (8q13.1) / SKAP2 (7p15.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG6   32965
Cards
Entrez_Gene (NCBI)SNHG6  641638  small nucleolar RNA host gene 6
AliasesHBII-276HG; NCRNA00058; U87HG
GeneCards (Weizmann)SNHG6
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr8:66921995-66925541 [Contig_View]  SNHG6 [Vega]
TCGA cBioPortalSNHG6
AceView (NCBI)SNHG6
Genatlas (Paris)SNHG6
WikiGenes641638
SOURCE (Princeton)SNHG6
Genetics Home Reference (NIH)SNHG6
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG6  -     chr8:66921995-66925541 -  8q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG6  -     8q13.1   [Description]    (hg19-Feb_2009)
EnsemblSNHG6 - 8q13.1 [CytoView hg19]  SNHG6 - 8q13.1 [CytoView hg38]
Mapping of homologs : NCBISNHG6 [Mapview hg19]  SNHG6 [Mapview hg38]
OMIM612215   
Gene and transcription
Genbank (Entrez)AK057116 AY264285
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG6
Cluster EST : UnigeneHs.372680 [ NCBI ]
CGAP (NCI)Hs.372680
Gene ExpressionSNHG6 [ NCBI-GEO ]   SNHG6 [ EBI - ARRAY_EXPRESS ]   SNHG6 [ SEEK ]   SNHG6 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)641638
GTEX Portal (Tissue expression)SNHG6
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG6
DMDM Disease mutations641638
Blocks (Seattle)SNHG6
Protein Interaction databases
BioGRIDSNHG6
STRING (EMBL)SNHG6
ZODIACSNHG6
Ontologies - Pathways
Huge Navigator SNHG6 [HugePedia]
snp3D : Map Gene to Disease641638
BioCentury BCIQSNHG6
ClinGenSNHG6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD641638
Chemical/Pharm GKB GenePA147357291
Clinical trialSNHG6
Miscellaneous
canSAR (ICR)SNHG6 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG6
EVEXSNHG6
GoPubMedSNHG6
iHOPSNHG6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 13:11:58 CET 2017

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