Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNHG7 (small nucleolar RNA host gene 7)

Identity

Alias_namessmall nucleolar RNA host gene 7 (non-protein coding)
Alias_symbol (synonym)MGC16037
NCRNA00061
Other alias
HGNC (Hugo) SNHG7
LocusID (NCBI) 84973
Atlas_Id 54647
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 139619684 and ends at 139622636 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
NOTCH1 (9q34.3) / SNHG7 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG7   28254
Cards
Entrez_Gene (NCBI)SNHG7  84973  small nucleolar RNA host gene 7
AliasesNCRNA00061
GeneCards (Weizmann)SNHG7
Ensembl hg19 (Hinxton)ENSG00000233016 [Gene_View]  chr9:139619684-139622636 [Contig_View]  SNHG7 [Vega]
Ensembl hg38 (Hinxton)ENSG00000233016 [Gene_View]  chr9:139619684-139622636 [Contig_View]  SNHG7 [Vega]
ICGC DataPortalENSG00000233016
TCGA cBioPortalSNHG7
AceView (NCBI)SNHG7
Genatlas (Paris)SNHG7
WikiGenes84973
SOURCE (Princeton)SNHG7
Genetics Home Reference (NIH)SNHG7
Genomic and cartography
GoldenPath hg19 (UCSC)SNHG7  -     chr9:139619684-139622636 -  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNHG7  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblSNHG7 - 9q34.3 [CytoView hg19]  SNHG7 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBISNHG7 [Mapview hg19]  SNHG7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK090585 BC007651 BC042369 BC042667 BC055011
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)SNHG7
Cluster EST : UnigeneHs.495480 [ NCBI ]
CGAP (NCI)Hs.495480
Alternative Splicing GalleryENSG00000233016
Gene ExpressionSNHG7 [ NCBI-GEO ]   SNHG7 [ EBI - ARRAY_EXPRESS ]   SNHG7 [ SEEK ]   SNHG7 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)84973
GTEX Portal (Tissue expression)SNHG7
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG7
DMDM Disease mutations84973
Blocks (Seattle)SNHG7
Human Protein AtlasENSG00000233016
IPIIPI00975537   
Protein Interaction databases
FunCoupENSG00000233016
BioGRIDSNHG7
STRING (EMBL)SNHG7
ZODIACSNHG7
Ontologies - Pathways
Huge Navigator SNHG7 [HugePedia]
snp3D : Map Gene to Disease84973
BioCentury BCIQSNHG7
ClinGenSNHG7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD84973
Chemical/Pharm GKB GenePA147357292
Clinical trialSNHG7
Miscellaneous
canSAR (ICR)SNHG7 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG7
EVEXSNHG7
GoPubMedSNHG7
iHOPSNHG7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Mar 30 15:20:16 CEST 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.