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SNHG8 (small nucleolar RNA host gene 8)

Identity

Alias (NCBI)LINC00060
NCRNA00060
HGNC (Hugo) SNHG8
HGNC Alias symbNCRNA00060
LINC00060
HGNC Alias namenon-protein coding RNA 60
 long intergenic non-protein coding RNA 60
HGNC Previous namesmall nucleolar RNA host gene 8 (non-protein coding)
LocusID (NCBI) 100093630
Atlas_Id 57633
Location 4q26  [Link to chromosome band 4q26]
Location_base_pair Starts at 118278762 and ends at 118279823 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
JADE1 (4q28.2) / SNHG8 (4q26)TOPORS (9p21.1) / SNHG8 (4q26)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SNHG8   33098
Cards
Entrez_Gene (NCBI)SNHG8    small nucleolar RNA host gene 8
AliasesLINC00060; NCRNA00060
GeneCards (Weizmann)SNHG8
Ensembl hg19 (Hinxton)ENSG00000269893 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269893 [Gene_View]  ENSG00000269893 [Sequence]  chr4:118278762-118279823 [Contig_View]  SNHG8 [Vega]
ICGC DataPortalENSG00000269893
TCGA cBioPortalSNHG8
AceView (NCBI)SNHG8
Genatlas (Paris)SNHG8
SOURCE (Princeton)SNHG8
Genetics Home Reference (NIH)SNHG8
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG8  -     chr4:118278762-118279823 +  4q26   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG8  -     4q26   [Description]    (hg19-Feb_2009)
GoldenPathSNHG8 - 4q26 [CytoView hg19]  SNHG8 - 4q26 [CytoView hg38]
ImmunoBaseENSG00000269893
Genome Data Viewer NCBISNHG8 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)BC017993 BC039555 BM845860 CD520851 CF124302
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG8
Gene ExpressionSNHG8 [ NCBI-GEO ]   SNHG8 [ EBI - ARRAY_EXPRESS ]   SNHG8 [ SEEK ]   SNHG8 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG8 [ Firebrowse - Broad ]
GenevisibleExpression of SNHG8 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100093630
GTEX Portal (Tissue expression)SNHG8
Human Protein AtlasENSG00000269893-SNHG8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG8
Human Protein Atlas [tissue]ENSG00000269893-SNHG8 [tissue]
Protein Interaction databases
BioGRIDSNHG8
STRING (EMBL)SNHG8
ZODIACSNHG8
Ontologies - Pathways
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSNHG8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:32:24 CEST 2021

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