Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNHG8 (small nucleolar RNA host gene 8)

Identity

Alias_namessmall nucleolar RNA host gene 8 (non-protein coding)
Alias_symbol (synonym)NCRNA00060
LINC00060
Other alias
HGNC (Hugo) SNHG8
LocusID (NCBI) 100093630
Atlas_Id 73652
Location 4q26  [Link to chromosome band 4q26]
Location_base_pair Starts at 118278762 and ends at 118279823 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
JADE1 (4q28.2) / SNHG8 (4q26)TOPORS (9p21.1) / SNHG8 (4q26)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG8   33098
Cards
Entrez_Gene (NCBI)SNHG8  100093630  small nucleolar RNA host gene 8
AliasesLINC00060; NCRNA00060
GeneCards (Weizmann)SNHG8
Ensembl hg19 (Hinxton)ENSG00000269893 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000269893 [Gene_View]  chr4:118278762-118279823 [Contig_View]  SNHG8 [Vega]
ICGC DataPortalENSG00000269893
TCGA cBioPortalSNHG8
AceView (NCBI)SNHG8
Genatlas (Paris)SNHG8
WikiGenes100093630
SOURCE (Princeton)SNHG8
Genetics Home Reference (NIH)SNHG8
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG8  -     chr4:118278762-118279823 +  4q26   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG8  -     4q26   [Description]    (hg19-Feb_2009)
EnsemblSNHG8 - 4q26 [CytoView hg19]  SNHG8 - 4q26 [CytoView hg38]
Mapping of homologs : NCBISNHG8 [Mapview hg19]  SNHG8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BC017993 BC039555 BM845860 CD520851 CF124302
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG8
Cluster EST : UnigeneHs.535762 [ NCBI ]
CGAP (NCI)Hs.535762
Alternative Splicing GalleryENSG00000269893
Gene ExpressionSNHG8 [ NCBI-GEO ]   SNHG8 [ EBI - ARRAY_EXPRESS ]   SNHG8 [ SEEK ]   SNHG8 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100093630
GTEX Portal (Tissue expression)SNHG8
Human Protein AtlasENSG00000269893-SNHG8 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG8
DMDM Disease mutations100093630
Blocks (Seattle)SNHG8
Human Protein Atlas [tissue]ENSG00000269893-SNHG8 [tissue]
Protein Interaction databases
FunCoupENSG00000269893
BioGRIDSNHG8
STRING (EMBL)SNHG8
ZODIACSNHG8
Ontologies - Pathways
Huge Navigator SNHG8 [HugePedia]
snp3D : Map Gene to Disease100093630
BioCentury BCIQSNHG8
ClinGenSNHG8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100093630
Chemical/Pharm GKB GenePA147357293
Clinical trialSNHG8
Miscellaneous
canSAR (ICR)SNHG8 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG8
EVEXSNHG8
GoPubMedSNHG8
iHOPSNHG8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:10:56 CET 2017

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