Atlas of Genetics and Cytogenetics in Oncology and Haematology


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SNHG9 (small nucleolar RNA host gene 9)

Identity

Alias_namessmall nucleolar RNA host gene 9 (non-protein coding)
Alias_symbol (synonym)DKFZp686N06141
NCRNA00062
Other alias
HGNC (Hugo) SNHG9
LocusID (NCBI) 735301
Atlas_Id 73653
Location 16p13.3  [Link to chromosome band 16p13]
Location_base_pair Starts at 1964996 and ends at 1965504 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNHG9   33102
Cards
Entrez_Gene (NCBI)SNHG9  735301  small nucleolar RNA host gene 9
AliasesNCRNA00062
GeneCards (Weizmann)SNHG9
Ensembl hg19 (Hinxton)ENSG00000255198 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000255198 [Gene_View]  chr16:1964996-1965504 [Contig_View]  SNHG9 [Vega]
ICGC DataPortalENSG00000255198
TCGA cBioPortalSNHG9
AceView (NCBI)SNHG9
Genatlas (Paris)SNHG9
WikiGenes735301
SOURCE (Princeton)SNHG9
Genetics Home Reference (NIH)SNHG9
Genomic and cartography
GoldenPath hg38 (UCSC)SNHG9  -     chr16:1964996-1965504 +  16p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNHG9  -     16p13.3   [Description]    (hg19-Feb_2009)
EnsemblSNHG9 - 16p13.3 [CytoView hg19]  SNHG9 - 16p13.3 [CytoView hg38]
Mapping of homologs : NCBISNHG9 [Mapview hg19]  SNHG9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)CR749453
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNHG9
Cluster EST : UnigeneHs.115329 [ NCBI ]
CGAP (NCI)Hs.115329
Alternative Splicing GalleryENSG00000255198
Gene ExpressionSNHG9 [ NCBI-GEO ]   SNHG9 [ EBI - ARRAY_EXPRESS ]   SNHG9 [ SEEK ]   SNHG9 [ MEM ]
Gene Expression Viewer (FireBrowse)SNHG9 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)735301
GTEX Portal (Tissue expression)SNHG9
Human Protein AtlasENSG00000255198-SNHG9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNHG9
DMDM Disease mutations735301
Blocks (Seattle)SNHG9
Human Protein Atlas [tissue]ENSG00000255198-SNHG9 [tissue]
Protein Interaction databases
FunCoupENSG00000255198
BioGRIDSNHG9
STRING (EMBL)SNHG9
ZODIACSNHG9
Ontologies - Pathways
Huge Navigator SNHG9 [HugePedia]
snp3D : Map Gene to Disease735301
BioCentury BCIQSNHG9
ClinGenSNHG9
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD735301
Chemical/Pharm GKB GenePA147357294
Clinical trialSNHG9
Miscellaneous
canSAR (ICR)SNHG9 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNHG9
EVEXSNHG9
GoPubMedSNHG9
iHOPSNHG9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:34:22 CET 2017

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