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SNIP1 (Smad nuclear interacting protein 1)

Identity

Alias (NCBI)PML1
PMRED
HGNC (Hugo) SNIP1
HGNC Alias symbPML1
HGNC Alias namePML1 homolog (yeast)
LocusID (NCBI) 79753
Atlas_Id 50509
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 37534449 and ends at 37554293 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNIP1 (1p34.3) / C11orf58 (11p15.1)SNIP1 (1p34.3) / COL1A2 (7q21.3)SNIP1 (1p34.3) / DNALI1 (1p34.3)
TMEM176B (7q36.1) / SNIP1 (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)SNIP1   30587
Cards
Entrez_Gene (NCBI)SNIP1    Smad nuclear interacting protein 1
AliasesPML1; PMRED
GeneCards (Weizmann)SNIP1
Ensembl hg19 (Hinxton)ENSG00000163877 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000163877 [Gene_View]  ENSG00000163877 [Sequence]  chr1:37534449-37554293 [Contig_View]  SNIP1 [Vega]
ICGC DataPortalENSG00000163877
TCGA cBioPortalSNIP1
AceView (NCBI)SNIP1
Genatlas (Paris)SNIP1
SOURCE (Princeton)SNIP1
Genetics Home Reference (NIH)SNIP1
Genomic and cartography
GoldenPath hg38 (UCSC)SNIP1  -     chr1:37534449-37554293 -  1p34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNIP1  -     1p34.3   [Description]    (hg19-Feb_2009)
GoldenPathSNIP1 - 1p34.3 [CytoView hg19]  SNIP1 - 1p34.3 [CytoView hg38]
ImmunoBaseENSG00000163877
Genome Data Viewer NCBISNIP1 [Mapview hg19]  
OMIM608241   614501   
Gene and transcription
Genbank (Entrez)AK022615 AK027622 AK293229 AK297176 AK300796
RefSeq transcript (Entrez)NM_024700
Consensus coding sequences : CCDS (NCBI)SNIP1
Gene ExpressionSNIP1 [ NCBI-GEO ]   SNIP1 [ EBI - ARRAY_EXPRESS ]   SNIP1 [ SEEK ]   SNIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SNIP1 [ Firebrowse - Broad ]
GenevisibleExpression of SNIP1 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79753
GTEX Portal (Tissue expression)SNIP1
Human Protein AtlasENSG00000163877-SNIP1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAD8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAD8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAD8
PhosPhoSitePlusQ8TAD8
Domaine pattern : Prosite (Expaxy)FHA_DOMAIN (PS50006)   
Domains : Interpro (EBI)FHA_dom    SMAD_FHA_dom_sf   
Domain families : Pfam (Sanger)FHA (PF00498)   
Domain families : Pfam (NCBI)pfam00498   
Domain families : Smart (EMBL)FHA (SM00240)  
Conserved Domain (NCBI)SNIP1
PDB (RSDB)5Z56    5Z57    5Z58    6FF7   
PDB Europe5Z56    5Z57    5Z58    6FF7   
PDB (PDBSum)5Z56    5Z57    5Z58    6FF7   
PDB (IMB)5Z56    5Z57    5Z58    6FF7   
Structural Biology KnowledgeBase5Z56    5Z57    5Z58    6FF7   
SCOP (Structural Classification of Proteins)5Z56    5Z57    5Z58    6FF7   
CATH (Classification of proteins structures)5Z56    5Z57    5Z58    6FF7   
SuperfamilyQ8TAD8
AlphaFold pdb e-kbQ8TAD8   
Human Protein Atlas [tissue]ENSG00000163877-SNIP1 [tissue]
HPRD06999
Protein Interaction databases
DIP (DOE-UCLA)Q8TAD8
IntAct (EBI)Q8TAD8
BioGRIDSNIP1
STRING (EMBL)SNIP1
ZODIACSNIP1
Ontologies - Pathways
QuickGOQ8TAD8
Ontology : AmiGOmRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  nucleus  nucleus  nucleoplasm  cytosol  regulation of transcription by RNA polymerase II  I-kappaB kinase/NF-kappaB signaling  production of miRNAs involved in gene silencing by miRNA  production of miRNAs involved in gene silencing by miRNA  U2-type precatalytic spliceosome  
Ontology : EGO-EBImRNA splicing, via spliceosome  RNA binding  mRNA binding  protein binding  nucleus  nucleus  nucleoplasm  cytosol  regulation of transcription by RNA polymerase II  I-kappaB kinase/NF-kappaB signaling  production of miRNAs involved in gene silencing by miRNA  production of miRNAs involved in gene silencing by miRNA  U2-type precatalytic spliceosome  
NDEx NetworkSNIP1
Atlas of Cancer Signalling NetworkSNIP1
Wikipedia pathwaysSNIP1
Orthology - Evolution
OrthoDB79753
GeneTree (enSembl)ENSG00000163877
Phylogenetic Trees/Animal Genes : TreeFamSNIP1
Homologs : HomoloGeneSNIP1
Homology/Alignments : Family Browser (UCSC)SNIP1
Gene fusions - Rearrangements
Fusion : QuiverSNIP1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNIP1
dbVarSNIP1
ClinVarSNIP1
MonarchSNIP1
1000_GenomesSNIP1 
Exome Variant ServerSNIP1
GNOMAD BrowserENSG00000163877
Varsome BrowserSNIP1
ACMGSNIP1 variants
VarityQ8TAD8
Genomic Variants (DGV)SNIP1 [DGVbeta]
DECIPHERSNIP1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNIP1 
Mutations
ICGC Data PortalSNIP1 
TCGA Data PortalSNIP1 
Broad Tumor PortalSNIP1
OASIS PortalSNIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DSNIP1
Mutations and Diseases : HGMDSNIP1
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaSNIP1
DgiDB (Drug Gene Interaction Database)SNIP1
DoCM (Curated mutations)SNIP1
CIViC (Clinical Interpretations of Variants in Cancer)SNIP1
Cancer3DSNIP1
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608241    614501   
Orphanet
DisGeNETSNIP1
MedgenSNIP1
Genetic Testing Registry SNIP1
NextProtQ8TAD8 [Medical]
GENETestsSNIP1
Target ValidationSNIP1
Huge Navigator SNIP1 [HugePedia]
ClinGenSNIP1
Clinical trials, drugs, therapy
MyCancerGenomeSNIP1
Protein Interactions : CTDSNIP1
Pharm GKB GenePA142670893
PharosQ8TAD8
Clinical trialSNIP1
Miscellaneous
canSAR (ICR)SNIP1
HarmonizomeSNIP1
DataMed IndexSNIP1
Probes
Litterature
PubMed57 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSNIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:32:25 CEST 2021

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