Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNIP1 (Smad nuclear interacting protein 1)

Identity

Other aliasPMRED
HGNC (Hugo) SNIP1
LocusID (NCBI) 79753
Atlas_Id 50509
Location 1p34.3  [Link to chromosome band 1p34]
Location_base_pair Starts at 38000050 and ends at 38019945 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
SNIP1 (1p34.3) / C11orf58 (11p15.1)SNIP1 (1p34.3) / COL1A2 (7q21.3)SNIP1 (1p34.3) / DNALI1 (1p34.3)
TMEM176B (7q36.1) / SNIP1 (1p34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNIP1   30587
Cards
Entrez_Gene (NCBI)SNIP1  79753  Smad nuclear interacting protein 1
AliasesPMRED
GeneCards (Weizmann)SNIP1
Ensembl hg19 (Hinxton)ENSG00000163877 [Gene_View]  chr1:38000050-38019945 [Contig_View]  SNIP1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000163877 [Gene_View]  chr1:38000050-38019945 [Contig_View]  SNIP1 [Vega]
ICGC DataPortalENSG00000163877
TCGA cBioPortalSNIP1
AceView (NCBI)SNIP1
Genatlas (Paris)SNIP1
WikiGenes79753
SOURCE (Princeton)SNIP1
Genetics Home Reference (NIH)SNIP1
Genomic and cartography
GoldenPath hg19 (UCSC)SNIP1  -     chr1:38000050-38019945 -  1p34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)SNIP1  -     1p34.3   [Description]    (hg38-Dec_2013)
EnsemblSNIP1 - 1p34.3 [CytoView hg19]  SNIP1 - 1p34.3 [CytoView hg38]
Mapping of homologs : NCBISNIP1 [Mapview hg19]  SNIP1 [Mapview hg38]
OMIM608241   614501   
Gene and transcription
Genbank (Entrez)AK022615 AK027622 AK293229 AK297176 AK300796
RefSeq transcript (Entrez)NM_024700
RefSeq genomic (Entrez)NC_000001 NC_018912 NG_032170 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)SNIP1
Cluster EST : UnigeneHs.47232 [ NCBI ]
CGAP (NCI)Hs.47232
Alternative Splicing GalleryENSG00000163877
Gene ExpressionSNIP1 [ NCBI-GEO ]   SNIP1 [ EBI - ARRAY_EXPRESS ]   SNIP1 [ SEEK ]   SNIP1 [ MEM ]
Gene Expression Viewer (FireBrowse)SNIP1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79753
GTEX Portal (Tissue expression)SNIP1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TAD8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TAD8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TAD8
Splice isoforms : SwissVarQ8TAD8
PhosPhoSitePlusQ8TAD8
Domaine pattern : Prosite (Expaxy)FHA_DOMAIN (PS50006)   
Domains : Interpro (EBI)FHA_dom    SMAD_FHA_domain   
Domain families : Pfam (Sanger)FHA (PF00498)   
Domain families : Pfam (NCBI)pfam00498   
Domain families : Smart (EMBL)FHA (SM00240)  
Conserved Domain (NCBI)SNIP1
DMDM Disease mutations79753
Blocks (Seattle)SNIP1
SuperfamilyQ8TAD8
Human Protein AtlasENSG00000163877
Peptide AtlasQ8TAD8
HPRD06999
IPIIPI00154515   IPI00910561   
Protein Interaction databases
DIP (DOE-UCLA)Q8TAD8
IntAct (EBI)Q8TAD8
FunCoupENSG00000163877
BioGRIDSNIP1
STRING (EMBL)SNIP1
ZODIACSNIP1
Ontologies - Pathways
QuickGOQ8TAD8
Ontology : AmiGOprotein binding  nucleoplasm  cytoplasm  regulation of transcription, DNA-templated  I-kappaB kinase/NF-kappaB signaling  production of miRNAs involved in gene silencing by miRNA  poly(A) RNA binding  positive regulation of protein targeting to mitochondrion  
Ontology : EGO-EBIprotein binding  nucleoplasm  cytoplasm  regulation of transcription, DNA-templated  I-kappaB kinase/NF-kappaB signaling  production of miRNAs involved in gene silencing by miRNA  poly(A) RNA binding  positive regulation of protein targeting to mitochondrion  
NDEx NetworkSNIP1
Atlas of Cancer Signalling NetworkSNIP1
Wikipedia pathwaysSNIP1
Orthology - Evolution
OrthoDB79753
GeneTree (enSembl)ENSG00000163877
Phylogenetic Trees/Animal Genes : TreeFamSNIP1
HOVERGENQ8TAD8
HOGENOMQ8TAD8
Homologs : HomoloGeneSNIP1
Homology/Alignments : Family Browser (UCSC)SNIP1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNIP1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNIP1
dbVarSNIP1
ClinVarSNIP1
1000_GenomesSNIP1 
Exome Variant ServerSNIP1
ExAC (Exome Aggregation Consortium)SNIP1 (select the gene name)
Genetic variants : HAPMAP79753
Genomic Variants (DGV)SNIP1 [DGVbeta]
DECIPHER (Syndromes)1:38000050-38019945  ENSG00000163877
CONAN: Copy Number AnalysisSNIP1 
Mutations
ICGC Data PortalSNIP1 
TCGA Data PortalSNIP1 
Broad Tumor PortalSNIP1
OASIS PortalSNIP1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNIP1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNIP1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNIP1
DgiDB (Drug Gene Interaction Database)SNIP1
DoCM (Curated mutations)SNIP1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNIP1 (select a term)
intoGenSNIP1
Cancer3DSNIP1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM608241    614501   
Orphanet
MedgenSNIP1
Genetic Testing Registry SNIP1
NextProtQ8TAD8 [Medical]
TSGene79753
GENETestsSNIP1
Huge Navigator SNIP1 [HugePedia]
snp3D : Map Gene to Disease79753
BioCentury BCIQSNIP1
ClinGenSNIP1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79753
Chemical/Pharm GKB GenePA142670893
Clinical trialSNIP1
Miscellaneous
canSAR (ICR)SNIP1 (select the gene name)
Probes
Litterature
PubMed32 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNIP1
EVEXSNIP1
GoPubMedSNIP1
iHOPSNIP1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Mar 14 13:28:27 CET 2017

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.