Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNN (stannin)

Identity

Other alias-
HGNC (Hugo) SNN
LocusID (NCBI) 8303
Atlas_Id 73654
Location 16p13.13  [Link to chromosome band 16p13]
Location_base_pair Starts at 11668433 and ends at 11679161 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
SNN (16p13.13) / SNN (16p13.13)SNN (16p13.13) / TSPAN14 (10q23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNN   11149
Cards
Entrez_Gene (NCBI)SNN  8303  stannin
Aliases
GeneCards (Weizmann)SNN
Ensembl hg19 (Hinxton)ENSG00000184602 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000184602 [Gene_View]  chr16:11668433-11679161 [Contig_View]  SNN [Vega]
ICGC DataPortalENSG00000184602
TCGA cBioPortalSNN
AceView (NCBI)SNN
Genatlas (Paris)SNN
WikiGenes8303
SOURCE (Princeton)SNN
Genetics Home Reference (NIH)SNN
Genomic and cartography
GoldenPath hg38 (UCSC)SNN  -     chr16:11668433-11679161 +  16p13.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNN  -     16p13.13   [Description]    (hg19-Feb_2009)
EnsemblSNN - 16p13.13 [CytoView hg19]  SNN - 16p13.13 [CytoView hg38]
Mapping of homologs : NCBISNN [Mapview hg19]  SNN [Mapview hg38]
OMIM603032   
Gene and transcription
Genbank (Entrez)AF030196 AF070673 AK025795 AL161976 AL538273
RefSeq transcript (Entrez)NM_003498
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNN
Cluster EST : UnigeneHs.618526 [ NCBI ]
CGAP (NCI)Hs.618526
Alternative Splicing GalleryENSG00000184602
Gene ExpressionSNN [ NCBI-GEO ]   SNN [ EBI - ARRAY_EXPRESS ]   SNN [ SEEK ]   SNN [ MEM ]
Gene Expression Viewer (FireBrowse)SNN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)8303
GTEX Portal (Tissue expression)SNN
Human Protein AtlasENSG00000184602-SNN [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtO75324   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtO75324  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProO75324
Splice isoforms : SwissVarO75324
PhosPhoSitePlusO75324
Domains : Interpro (EBI)SNN_cytoplasm    SNN_linker    SNN_transmemb    Stannin   
Domain families : Pfam (Sanger)SNN_cytoplasm (PF09051)    SNN_linker (PF09050)    SNN_transmemb (PF09049)   
Domain families : Pfam (NCBI)pfam09051    pfam09050    pfam09049   
Conserved Domain (NCBI)SNN
DMDM Disease mutations8303
Blocks (Seattle)SNN
PDB (SRS)1ZZA   
PDB (PDBSum)1ZZA   
PDB (IMB)1ZZA   
PDB (RSDB)1ZZA   
Structural Biology KnowledgeBase1ZZA   
SCOP (Structural Classification of Proteins)1ZZA   
CATH (Classification of proteins structures)1ZZA   
SuperfamilyO75324
Human Protein Atlas [tissue]ENSG00000184602-SNN [tissue]
Peptide AtlasO75324
HPRD04327
IPIIPI00025255   
Protein Interaction databases
DIP (DOE-UCLA)O75324
IntAct (EBI)O75324
FunCoupENSG00000184602
BioGRIDSNN
STRING (EMBL)SNN
ZODIACSNN
Ontologies - Pathways
QuickGOO75324
Ontology : AmiGOcytoplasm  mitochondrial outer membrane  response to toxic substance  integral component of membrane  metal ion binding  
Ontology : EGO-EBIcytoplasm  mitochondrial outer membrane  response to toxic substance  integral component of membrane  metal ion binding  
NDEx NetworkSNN
Atlas of Cancer Signalling NetworkSNN
Wikipedia pathwaysSNN
Orthology - Evolution
OrthoDB8303
GeneTree (enSembl)ENSG00000184602
Phylogenetic Trees/Animal Genes : TreeFamSNN
HOVERGENO75324
HOGENOMO75324
Homologs : HomoloGeneSNN
Homology/Alignments : Family Browser (UCSC)SNN
Gene fusions - Rearrangements
Tumor Fusion PortalSNN
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerSNN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)SNN
dbVarSNN
ClinVarSNN
1000_GenomesSNN 
Exome Variant ServerSNN
ExAC (Exome Aggregation Consortium)ENSG00000184602
GNOMAD BrowserENSG00000184602
Genetic variants : HAPMAP8303
Genomic Variants (DGV)SNN [DGVbeta]
DECIPHERSNN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisSNN 
Mutations
ICGC Data PortalSNN 
TCGA Data PortalSNN 
Broad Tumor PortalSNN
OASIS PortalSNN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICSNN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDSNN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch SNN
DgiDB (Drug Gene Interaction Database)SNN
DoCM (Curated mutations)SNN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)SNN (select a term)
intoGenSNN
Cancer3DSNN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603032   
Orphanet
DisGeNETSNN
MedgenSNN
Genetic Testing Registry SNN
NextProtO75324 [Medical]
TSGene8303
GENETestsSNN
Target ValidationSNN
Huge Navigator SNN [HugePedia]
snp3D : Map Gene to Disease8303
BioCentury BCIQSNN
ClinGenSNN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD8303
Chemical/Pharm GKB GenePA35991
Clinical trialSNN
Miscellaneous
canSAR (ICR)SNN (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNN
EVEXSNN
GoPubMedSNN
iHOPSNN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:34:22 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.