Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNORA109 (small nucleolar RNA, H/ACA box 109)

Identity

Other alias-
HGNC (Hugo) SNORA109
LocusID (NCBI) 106635544
Atlas_Id 77979
Location Xp11.21  [Link to chromosome band Xp11]
Location_base_pair Starts at 55183481 and ends at 55183607 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORA109   51402
Cards
Entrez_Gene (NCBI)SNORA109  106635544  small nucleolar RNA, H/ACA box 109
Aliases
GeneCards (Weizmann)SNORA109
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:55183481-55183607 [Contig_View]  SNORA109 [Vega]
TCGA cBioPortalSNORA109
AceView (NCBI)SNORA109
Genatlas (Paris)SNORA109
WikiGenes106635544
SOURCE (Princeton)SNORA109
Genetics Home Reference (NIH)SNORA109
Genomic and cartography
GoldenPath hg38 (UCSC)SNORA109  -     chrX:55183481-55183607 -  Xp11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORA109  -     Xp11.21   [Description]    (hg19-Feb_2009)
EnsemblSNORA109 - Xp11.21 [CytoView hg19]  SNORA109 - Xp11.21 [CytoView hg38]
Mapping of homologs : NCBISNORA109 [Mapview hg19]  SNORA109 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORA109
Gene ExpressionSNORA109 [ NCBI-GEO ]   SNORA109 [ EBI - ARRAY_EXPRESS ]   SNORA109 [ SEEK ]   SNORA109 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORA109 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)106635544
GTEX Portal (Tissue expression)SNORA109
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORA109
DMDM Disease mutations106635544
Blocks (Seattle)SNORA109
Protein Interaction databases
BioGRIDSNORA109
STRING (EMBL)SNORA109
ZODIACSNORA109
Ontologies - Pathways
Huge Navigator SNORA109 [HugePedia]
snp3D : Map Gene to Disease106635544
BioCentury BCIQSNORA109
ClinGenSNORA109
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD106635544
Clinical trialSNORA109
Miscellaneous
canSAR (ICR)SNORA109 (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORA109
EVEXSNORA109
GoPubMedSNORA109
iHOPSNORA109
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 12:28:27 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.