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SNORA13 (small nucleolar RNA, H/ACA box 13)

Identity

Alias_symbol (synonym)ACA13
Other alias
HGNC (Hugo) SNORA13
LocusID (NCBI) 654322
Atlas_Id 73663
Location 5q22.1  [Link to chromosome band 5q22]
Location_base_pair Starts at 112161485 and ends at 112161617 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORA13   32601
Cards
Entrez_Gene (NCBI)SNORA13  654322  small nucleolar RNA, H/ACA box 13
AliasesACA13
GeneCards (Weizmann)SNORA13
Ensembl hg19 (Hinxton)ENSG00000238363 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000238363 [Gene_View]  chr5:112161485-112161617 [Contig_View]  SNORA13 [Vega]
ICGC DataPortalENSG00000238363
TCGA cBioPortalSNORA13
AceView (NCBI)SNORA13
Genatlas (Paris)SNORA13
WikiGenes654322
SOURCE (Princeton)SNORA13
Genetics Home Reference (NIH)SNORA13
Genomic and cartography
GoldenPath hg38 (UCSC)SNORA13  -     chr5:112161485-112161617 +  5q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORA13  -     5q22.1   [Description]    (hg19-Feb_2009)
EnsemblSNORA13 - 5q22.1 [CytoView hg19]  SNORA13 - 5q22.1 [CytoView hg38]
Mapping of homologs : NCBISNORA13 [Mapview hg19]  SNORA13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ609455
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORA13
Cluster EST : UnigeneHs.689709 [ NCBI ]
CGAP (NCI)Hs.689709
Alternative Splicing GalleryENSG00000238363
Gene ExpressionSNORA13 [ NCBI-GEO ]   SNORA13 [ EBI - ARRAY_EXPRESS ]   SNORA13 [ SEEK ]   SNORA13 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORA13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)654322
GTEX Portal (Tissue expression)SNORA13
Human Protein AtlasENSG00000238363-SNORA13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORA13
DMDM Disease mutations654322
Blocks (Seattle)SNORA13
Human Protein Atlas [tissue]ENSG00000238363-SNORA13 [tissue]
Protein Interaction databases
FunCoupENSG00000238363
BioGRIDSNORA13
STRING (EMBL)SNORA13
ZODIACSNORA13
Ontologies - Pathways
Huge Navigator SNORA13 [HugePedia]
snp3D : Map Gene to Disease654322
BioCentury BCIQSNORA13
ClinGenSNORA13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD654322
Chemical/Pharm GKB GenePA144596335
Clinical trialSNORA13
Miscellaneous
canSAR (ICR)SNORA13 (select the gene name)
Probes
Litterature
PubMed5 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORA13
EVEXSNORA13
GoPubMedSNORA13
iHOPSNORA13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:13:07 CET 2017

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