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SNORA38 (small nucleolar RNA, H/ACA box 38)

Identity

Alias_symbol (synonym)ACA38
Other alias
HGNC (Hugo) SNORA38
LocusID (NCBI) 677820
Atlas_Id 73694
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31623079 and ends at 31623210 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORA38   32631
Cards
Entrez_Gene (NCBI)SNORA38  677820  small nucleolar RNA, H/ACA box 38
AliasesACA38
GeneCards (Weizmann)SNORA38
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:31623079-31623210 [Contig_View]  SNORA38 [Vega]
TCGA cBioPortalSNORA38
AceView (NCBI)SNORA38
Genatlas (Paris)SNORA38
WikiGenes677820
SOURCE (Princeton)SNORA38
Genetics Home Reference (NIH)SNORA38
Genomic and cartography
GoldenPath hg38 (UCSC)SNORA38  -     chr6:31623079-31623210 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORA38  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblSNORA38 - 6p21.33 [CytoView hg19]  SNORA38 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBISNORA38 [Mapview hg19]  SNORA38 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ609474
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)SNORA38
Cluster EST : UnigeneHs.689700 [ NCBI ]
CGAP (NCI)Hs.689700
Gene ExpressionSNORA38 [ NCBI-GEO ]   SNORA38 [ EBI - ARRAY_EXPRESS ]   SNORA38 [ SEEK ]   SNORA38 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORA38 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677820
GTEX Portal (Tissue expression)SNORA38
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORA38
DMDM Disease mutations677820
Blocks (Seattle)SNORA38
Protein Interaction databases
BioGRIDSNORA38
STRING (EMBL)SNORA38
ZODIACSNORA38
Ontologies - Pathways
Huge Navigator SNORA38 [HugePedia]
snp3D : Map Gene to Disease677820
BioCentury BCIQSNORA38
ClinGenSNORA38
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677820
Chemical/Pharm GKB GenePA144596315
Clinical trialSNORA38
Miscellaneous
canSAR (ICR)SNORA38 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORA38
EVEXSNORA38
GoPubMedSNORA38
iHOPSNORA38
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:30:40 CEST 2018

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