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SNORA40 (small nucleolar RNA, H/ACA box 40)

Identity

Alias_symbol (synonym)ACA40
SNORA40A
Other alias
HGNC (Hugo) SNORA40
LocusID (NCBI) 677822
Atlas_Id 73697
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 93735110 and ends at 93735236 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORA40   32633
Cards
Entrez_Gene (NCBI)SNORA40  677822  small nucleolar RNA, H/ACA box 40
AliasesACA40; SNORA40A
GeneCards (Weizmann)SNORA40
Ensembl hg19 (Hinxton)ENSG00000210825 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000210825 [Gene_View]  chr11:93735110-93735236 [Contig_View]  SNORA40 [Vega]
ICGC DataPortalENSG00000210825
TCGA cBioPortalSNORA40
AceView (NCBI)SNORA40
Genatlas (Paris)SNORA40
WikiGenes677822
SOURCE (Princeton)SNORA40
Genetics Home Reference (NIH)SNORA40
Genomic and cartography
GoldenPath hg38 (UCSC)SNORA40  -     chr11:93735110-93735236 -  11q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORA40  -     11q21   [Description]    (hg19-Feb_2009)
EnsemblSNORA40 - 11q21 [CytoView hg19]  SNORA40 - 11q21 [CytoView hg38]
Mapping of homologs : NCBISNORA40 [Mapview hg19]  SNORA40 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ609445
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORA40
Cluster EST : UnigeneHs.732267 [ NCBI ]
CGAP (NCI)Hs.732267
Alternative Splicing GalleryENSG00000210825
Gene ExpressionSNORA40 [ NCBI-GEO ]   SNORA40 [ EBI - ARRAY_EXPRESS ]   SNORA40 [ SEEK ]   SNORA40 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORA40 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677822
GTEX Portal (Tissue expression)SNORA40
Human Protein AtlasENSG00000210825-SNORA40 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORA40
DMDM Disease mutations677822
Blocks (Seattle)SNORA40
Human Protein Atlas [tissue]ENSG00000210825-SNORA40 [tissue]
Protein Interaction databases
FunCoupENSG00000210825
BioGRIDSNORA40
STRING (EMBL)SNORA40
ZODIACSNORA40
Ontologies - Pathways
Huge Navigator SNORA40 [HugePedia]
snp3D : Map Gene to Disease677822
BioCentury BCIQSNORA40
ClinGenSNORA40
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677822
Chemical/Pharm GKB GenePA144596317
Clinical trialSNORA40
Miscellaneous
canSAR (ICR)SNORA40 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORA40
EVEXSNORA40
GoPubMedSNORA40
iHOPSNORA40
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:25:15 CET 2017

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