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SNORA40B (small nucleolar RNA, H/ACA box 40B)

Identity

Other alias-
HGNC (Hugo) SNORA40B
LocusID (NCBI) 109616967
Atlas_Id 79220
Location 2q21.3  [Link to chromosome band 2q21]
Location_base_pair Starts at 135136628 and ends at 135136755 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORA40B   52204
Cards
Entrez_Gene (NCBI)SNORA40B  109616967  small nucleolar RNA, H/ACA box 40B
Aliases
GeneCards (Weizmann)SNORA40B
Ensembl hg19 (Hinxton)ENSG00000208308 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000208308 [Gene_View]  chr2:135136628-135136755 [Contig_View]  SNORA40B [Vega]
ICGC DataPortalENSG00000208308
TCGA cBioPortalSNORA40B
AceView (NCBI)SNORA40B
Genatlas (Paris)SNORA40B
WikiGenes109616967
SOURCE (Princeton)SNORA40B
Genetics Home Reference (NIH)SNORA40B
Genomic and cartography
GoldenPath hg38 (UCSC)SNORA40B  -     chr2:135136628-135136755 +  2q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORA40B  -     2q21.3   [Description]    (hg19-Feb_2009)
EnsemblSNORA40B - 2q21.3 [CytoView hg19]  SNORA40B - 2q21.3 [CytoView hg38]
Mapping of homologs : NCBISNORA40B [Mapview hg19]  SNORA40B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORA40B
Alternative Splicing GalleryENSG00000208308
Gene ExpressionSNORA40B [ NCBI-GEO ]   SNORA40B [ EBI - ARRAY_EXPRESS ]   SNORA40B [ SEEK ]   SNORA40B [ MEM ]
Gene Expression Viewer (FireBrowse)SNORA40B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109616967
GTEX Portal (Tissue expression)SNORA40B
Human Protein AtlasENSG00000208308-SNORA40B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORA40B
DMDM Disease mutations109616967
Blocks (Seattle)SNORA40B
Human Protein Atlas [tissue]ENSG00000208308-SNORA40B [tissue]
Protein Interaction databases
FunCoupENSG00000208308
BioGRIDSNORA40B
STRING (EMBL)SNORA40B
ZODIACSNORA40B
Ontologies - Pathways
Huge Navigator SNORA40B [HugePedia]
snp3D : Map Gene to Disease109616967
BioCentury BCIQSNORA40B
ClinGenSNORA40B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109616967
Clinical trialSNORA40B
Miscellaneous
canSAR (ICR)SNORA40B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORA40B
EVEXSNORA40B
GoPubMedSNORA40B
iHOPSNORA40B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:23 CET 2017

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