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SNORA40C (small nucleolar RNA, H/ACA box 40C)

Identity

Other alias-
HGNC (Hugo) SNORA40C
LocusID (NCBI) 109616968
Atlas_Id 78900
Location 6q21  [Link to chromosome band 6q21]
Location_base_pair Starts at 110848546 and ends at 110848673 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORA40C   52205
Cards
Entrez_Gene (NCBI)SNORA40C  109616968  small nucleolar RNA, H/ACA box 40C
Aliases
GeneCards (Weizmann)SNORA40C
Ensembl hg19 (Hinxton)ENSG00000212587 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212587 [Gene_View]  ENSG00000212587 [Sequence]  chr6:110848546-110848673 [Contig_View]  SNORA40C [Vega]
ICGC DataPortalENSG00000212587
TCGA cBioPortalSNORA40C
AceView (NCBI)SNORA40C
Genatlas (Paris)SNORA40C
WikiGenes109616968
SOURCE (Princeton)SNORA40C
Genetics Home Reference (NIH)SNORA40C
Genomic and cartography
GoldenPath hg38 (UCSC)SNORA40C  -     chr6:110848546-110848673 +  6q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORA40C  -     6q21   [Description]    (hg19-Feb_2009)
EnsemblSNORA40C - 6q21 [CytoView hg19]  SNORA40C - 6q21 [CytoView hg38]
Mapping of homologs : NCBISNORA40C [Mapview hg19]  SNORA40C [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORA40C
Alternative Splicing GalleryENSG00000212587
Gene ExpressionSNORA40C [ NCBI-GEO ]   SNORA40C [ EBI - ARRAY_EXPRESS ]   SNORA40C [ SEEK ]   SNORA40C [ MEM ]
Gene Expression Viewer (FireBrowse)SNORA40C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109616968
GTEX Portal (Tissue expression)SNORA40C
Human Protein AtlasENSG00000212587-SNORA40C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORA40C
DMDM Disease mutations109616968
Blocks (Seattle)SNORA40C
Human Protein Atlas [tissue]ENSG00000212587-SNORA40C [tissue]
Protein Interaction databases
FunCoupENSG00000212587
BioGRIDSNORA40C
STRING (EMBL)SNORA40C
ZODIACSNORA40C
Ontologies - Pathways
Huge Navigator SNORA40C [HugePedia]
snp3D : Map Gene to Disease109616968
BioCentury BCIQSNORA40C
ClinGenSNORA40C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109616968
Clinical trialSNORA40C
Miscellaneous
canSAR (ICR)SNORA40C (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORA40C
EVEXSNORA40C
GoPubMedSNORA40C
iHOPSNORA40C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:30:41 CEST 2018

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