Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNORA46 (small nucleolar RNA, H/ACA box 46)

Identity

Alias_symbol (synonym)ACA46
Other alias
HGNC (Hugo) SNORA46
LocusID (NCBI) 677827
Atlas_Id 73703
Location 16q21  [Link to chromosome band 16q21]
Location_base_pair Starts at 58548499 and ends at 58548633 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORA46   32639
Cards
Entrez_Gene (NCBI)SNORA46  677827  small nucleolar RNA, H/ACA box 46
AliasesACA46
GeneCards (Weizmann)SNORA46
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr16:58548499-58548633 [Contig_View]  SNORA46 [Vega]
TCGA cBioPortalSNORA46
AceView (NCBI)SNORA46
Genatlas (Paris)SNORA46
WikiGenes677827
SOURCE (Princeton)SNORA46
Genetics Home Reference (NIH)SNORA46
Genomic and cartography
GoldenPath hg38 (UCSC)SNORA46  -     chr16:58548499-58548633 -  16q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORA46  -     16q21   [Description]    (hg19-Feb_2009)
EnsemblSNORA46 - 16q21 [CytoView hg19]  SNORA46 - 16q21 [CytoView hg38]
Mapping of homologs : NCBISNORA46 [Mapview hg19]  SNORA46 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ609467
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORA46
Cluster EST : UnigeneHs.688592 [ NCBI ]
CGAP (NCI)Hs.688592
Gene ExpressionSNORA46 [ NCBI-GEO ]   SNORA46 [ EBI - ARRAY_EXPRESS ]   SNORA46 [ SEEK ]   SNORA46 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORA46 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677827
GTEX Portal (Tissue expression)SNORA46
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORA46
DMDM Disease mutations677827
Blocks (Seattle)SNORA46
Protein Interaction databases
BioGRIDSNORA46
STRING (EMBL)SNORA46
ZODIACSNORA46
Ontologies - Pathways
Huge Navigator SNORA46 [HugePedia]
snp3D : Map Gene to Disease677827
BioCentury BCIQSNORA46
ClinGenSNORA46
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677827
Chemical/Pharm GKB GenePA144596323
Clinical trialSNORA46
Miscellaneous
canSAR (ICR)SNORA46 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORA46
EVEXSNORA46
GoPubMedSNORA46
iHOPSNORA46
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:34:23 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.