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SNORA48B (small nucleolar RNA, H/ACA box 48B)

Identity

Other alias-
HGNC (Hugo) SNORA48B
LocusID (NCBI) 109616969
Atlas_Id 80249
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 3532117 and ends at 3532251 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORA48B   52207
Cards
Entrez_Gene (NCBI)SNORA48B  109616969  small nucleolar RNA, H/ACA box 48B
Aliases
GeneCards (Weizmann)SNORA48B
Ensembl hg19 (Hinxton)ENSG00000212214 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212214 [Gene_View]  chrX:3532117-3532251 [Contig_View]  SNORA48B [Vega]
ICGC DataPortalENSG00000212214
TCGA cBioPortalSNORA48B
AceView (NCBI)SNORA48B
Genatlas (Paris)SNORA48B
WikiGenes109616969
SOURCE (Princeton)SNORA48B
Genetics Home Reference (NIH)SNORA48B
Genomic and cartography
GoldenPath hg38 (UCSC)SNORA48B  -     chrX:3532117-3532251 -  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORA48B  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblSNORA48B - Xp22.33 [CytoView hg19]  SNORA48B - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBISNORA48B [Mapview hg19]  SNORA48B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORA48B
Alternative Splicing GalleryENSG00000212214
Gene ExpressionSNORA48B [ NCBI-GEO ]   SNORA48B [ EBI - ARRAY_EXPRESS ]   SNORA48B [ SEEK ]   SNORA48B [ MEM ]
Gene Expression Viewer (FireBrowse)SNORA48B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109616969
GTEX Portal (Tissue expression)SNORA48B
Human Protein AtlasENSG00000212214-SNORA48B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORA48B
DMDM Disease mutations109616969
Blocks (Seattle)SNORA48B
Human Protein Atlas [tissue]ENSG00000212214-SNORA48B [tissue]
Protein Interaction databases
FunCoupENSG00000212214
BioGRIDSNORA48B
STRING (EMBL)SNORA48B
ZODIACSNORA48B
Ontologies - Pathways
Huge Navigator SNORA48B [HugePedia]
snp3D : Map Gene to Disease109616969
BioCentury BCIQSNORA48B
ClinGenSNORA48B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109616969
Clinical trialSNORA48B
Miscellaneous
canSAR (ICR)SNORA48B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORA48B
EVEXSNORA48B
GoPubMedSNORA48B
iHOPSNORA48B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 14:00:39 CET 2017

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