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SNORA50D (small nucleolar RNA, H/ACA box 50D)

Identity

Other alias-
HGNC (Hugo) SNORA50D
LocusID (NCBI) 109616958
Atlas_Id 79580
Location 5q13.2  [Link to chromosome band 5q13]
Location_base_pair Starts at 69160808 and ends at 69160939 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORA50D   50433
Cards
Entrez_Gene (NCBI)SNORA50D  109616958  small nucleolar RNA, H/ACA box 50D
Aliases
GeneCards (Weizmann)SNORA50D
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr5:69160808-69160939 [Contig_View]  SNORA50D [Vega]
TCGA cBioPortalSNORA50D
AceView (NCBI)SNORA50D
Genatlas (Paris)SNORA50D
WikiGenes109616958
SOURCE (Princeton)SNORA50D
Genetics Home Reference (NIH)SNORA50D
Genomic and cartography
GoldenPath hg38 (UCSC)SNORA50D  -     chr5:69160808-69160939 +  5q13.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORA50D  -     5q13.2   [Description]    (hg19-Feb_2009)
EnsemblSNORA50D - 5q13.2 [CytoView hg19]  SNORA50D - 5q13.2 [CytoView hg38]
Mapping of homologs : NCBISNORA50D [Mapview hg19]  SNORA50D [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORA50D
Gene ExpressionSNORA50D [ NCBI-GEO ]   SNORA50D [ EBI - ARRAY_EXPRESS ]   SNORA50D [ SEEK ]   SNORA50D [ MEM ]
Gene Expression Viewer (FireBrowse)SNORA50D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109616958
GTEX Portal (Tissue expression)SNORA50D
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORA50D
DMDM Disease mutations109616958
Blocks (Seattle)SNORA50D
Protein Interaction databases
BioGRIDSNORA50D
STRING (EMBL)SNORA50D
ZODIACSNORA50D
Ontologies - Pathways
Huge Navigator SNORA50D [HugePedia]
snp3D : Map Gene to Disease109616958
BioCentury BCIQSNORA50D
ClinGenSNORA50D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109616958
Clinical trialSNORA50D
Miscellaneous
canSAR (ICR)SNORA50D (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORA50D
EVEXSNORA50D
GoPubMedSNORA50D
iHOPSNORA50D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:30:45 CEST 2018

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