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SNORA80E (small nucleolar RNA, H/ACA box 80E)

Identity

Alias (NCBI)ACA42
SNORA42
HGNC (Hugo) SNORA80E
HGNC Alias symbACA42
HGNC Previous nameSNORA42
HGNC Previous namesmall nucleolar RNA, H/ACA box 42
LocusID (NCBI) 677823
Atlas_Id 53891
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155919909 and ends at 155920042 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SNORA80E   32635
Cards
Entrez_Gene (NCBI)SNORA80E    small nucleolar RNA, H/ACA box 80E
AliasesACA42; SNORA42
GeneCards (Weizmann)SNORA80E
Ensembl hg19 (Hinxton)ENSG00000207475 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000207475 [Gene_View]  ENSG00000207475 [Sequence]  chr1:155919909-155920042 [Contig_View]  SNORA80E [Vega]
ICGC DataPortalENSG00000207475
TCGA cBioPortalSNORA80E
AceView (NCBI)SNORA80E
Genatlas (Paris)SNORA80E
SOURCE (Princeton)SNORA80E
Genetics Home Reference (NIH)SNORA80E
Genomic and cartography
GoldenPath hg38 (UCSC)SNORA80E  -     chr1:155919909-155920042 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORA80E  -     1q22   [Description]    (hg19-Feb_2009)
GoldenPathSNORA80E - 1q22 [CytoView hg19]  SNORA80E - 1q22 [CytoView hg38]
ImmunoBaseENSG00000207475
Genome Data Viewer NCBISNORA80E [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ609465
RefSeq transcript (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORA80E
Gene ExpressionSNORA80E [ NCBI-GEO ]   SNORA80E [ EBI - ARRAY_EXPRESS ]   SNORA80E [ SEEK ]   SNORA80E [ MEM ]
Gene Expression Viewer (FireBrowse)SNORA80E [ Firebrowse - Broad ]
GenevisibleExpression of SNORA80E in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)677823
GTEX Portal (Tissue expression)SNORA80E
Human Protein AtlasENSG00000207475-SNORA80E [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORA80E
Human Protein Atlas [tissue]ENSG00000207475-SNORA80E [tissue]
Protein Interaction databases
BioGRIDSNORA80E
STRING (EMBL)SNORA80E
ZODIACSNORA80E
Ontologies - Pathways
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXSNORA80E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:32:26 CEST 2021

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