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SNORA80E (small nucleolar RNA, H/ACA box 80E)

Identity

Alias_namesSNORA42
small nucleolar RNA, H/ACA box 42
Alias_symbol (synonym)ACA42
Other alias
HGNC (Hugo) SNORA80E
LocusID (NCBI) 677823
Atlas_Id 53891
Location 1q22  [Link to chromosome band 1q22]
Location_base_pair Starts at 155919909 and ends at 155920042 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORA80E   32635
Cards
Entrez_Gene (NCBI)SNORA80E  677823  small nucleolar RNA, H/ACA box 80E
AliasesACA42; SNORA42
GeneCards (Weizmann)SNORA80E
Ensembl hg19 (Hinxton)ENSG00000207475 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000207475 [Gene_View]  ENSG00000207475 [Sequence]  chr1:155919909-155920042 [Contig_View]  SNORA80E [Vega]
ICGC DataPortalENSG00000207475
TCGA cBioPortalSNORA80E
AceView (NCBI)SNORA80E
Genatlas (Paris)SNORA80E
WikiGenes677823
SOURCE (Princeton)SNORA80E
Genetics Home Reference (NIH)SNORA80E
Genomic and cartography
GoldenPath hg38 (UCSC)SNORA80E  -     chr1:155919909-155920042 -  1q22   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORA80E  -     1q22   [Description]    (hg19-Feb_2009)
GoldenPathSNORA80E - 1q22 [CytoView hg19]  SNORA80E - 1q22 [CytoView hg38]
ImmunoBaseENSG00000207475
Mapping of homologs : NCBISNORA80E [Mapview hg19]  SNORA80E [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ609465
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORA80E
Cluster EST : UnigeneHs.676501 [ NCBI ]
CGAP (NCI)Hs.676501
Alternative Splicing GalleryENSG00000207475
Gene ExpressionSNORA80E [ NCBI-GEO ]   SNORA80E [ EBI - ARRAY_EXPRESS ]   SNORA80E [ SEEK ]   SNORA80E [ MEM ]
Gene Expression Viewer (FireBrowse)SNORA80E [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)677823
GTEX Portal (Tissue expression)SNORA80E
Human Protein AtlasENSG00000207475-SNORA80E [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORA80E
DMDM Disease mutations677823
Blocks (Seattle)SNORA80E
Human Protein Atlas [tissue]ENSG00000207475-SNORA80E [tissue]
Protein Interaction databases
FunCoupENSG00000207475
BioGRIDSNORA80E
STRING (EMBL)SNORA80E
ZODIACSNORA80E
Ontologies - Pathways
Huge Navigator SNORA80E [HugePedia]
snp3D : Map Gene to Disease677823
BioCentury BCIQSNORA80E
ClinGenSNORA80E
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD677823
Chemical/Pharm GKB GenePA144596319
Clinical trialSNORA80E
Miscellaneous
canSAR (ICR)SNORA80E (select the gene name)
DataMed IndexSNORA80E
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORA80E
EVEXSNORA80E
GoPubMedSNORA80E
iHOPSNORA80E
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Nov 13 18:08:49 CET 2019

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