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SNORD100 (small nucleolar RNA, C/D box 100)

Identity

Alias (NCBI)HBII-429
HGNC (Hugo) SNORD100
HGNC Alias symbHBII-429
LocusID (NCBI) 594838
Atlas_Id 73760
Location 6q23.2  [Link to chromosome band 6q23]
Location_base_pair Starts at 132816802 and ends at 132816877 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD100   32763
Cards
Entrez_Gene (NCBI)SNORD100  594838  small nucleolar RNA, C/D box 100
AliasesHBII-429
GeneCards (Weizmann)SNORD100
Ensembl hg19 (Hinxton)ENSG00000221500 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221500 [Gene_View]  ENSG00000221500 [Sequence]  chr6:132816802-132816877 [Contig_View]  SNORD100 [Vega]
ICGC DataPortalENSG00000221500
TCGA cBioPortalSNORD100
AceView (NCBI)SNORD100
Genatlas (Paris)SNORD100
WikiGenes594838
SOURCE (Princeton)SNORD100
Genetics Home Reference (NIH)SNORD100
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD100  -     chr6:132816802-132816877 +  6q23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD100  -     6q23.2   [Description]    (hg19-Feb_2009)
GoldenPathSNORD100 - 6q23.2 [CytoView hg19]  SNORD100 - 6q23.2 [CytoView hg38]
ImmunoBaseENSG00000221500
genome Data Viewer NCBISNORD100 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD100
Alternative Splicing GalleryENSG00000221500
Gene ExpressionSNORD100 [ NCBI-GEO ]   SNORD100 [ EBI - ARRAY_EXPRESS ]   SNORD100 [ SEEK ]   SNORD100 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD100 [ Firebrowse - Broad ]
GenevisibleExpression of SNORD100 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)594838
GTEX Portal (Tissue expression)SNORD100
Human Protein AtlasENSG00000221500-SNORD100 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD100
DMDM Disease mutations594838
Blocks (Seattle)SNORD100
Human Protein Atlas [tissue]ENSG00000221500-SNORD100 [tissue]
Protein Interaction databases
FunCoupENSG00000221500
BioGRIDSNORD100
STRING (EMBL)SNORD100
ZODIACSNORD100
Ontologies - Pathways
Huge Navigator SNORD100 [HugePedia]
snp3D : Map Gene to Disease594838
BioCentury BCIQSNORD100
ClinGenSNORD100
Clinical trials, drugs, therapy
Protein Interactions : CTD594838
Pharm GKB GenePA145007748
Clinical trialSNORD100
Miscellaneous
canSAR (ICR)SNORD100 (select the gene name)
HarmonizomeSNORD100
DataMed IndexSNORD100
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD100
EVEXSNORD100
GoPubMedSNORD100
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Aug 22 19:35:36 CEST 2020

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