Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNORD115-13 (small nucleolar RNA, C/D box 115-13)

Identity

Alias_symbol (synonym)HBII-52-13
Other alias
HGNC (Hugo) SNORD115-13
LocusID (NCBI) 100033450
Atlas_Id 73818
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 25193321 and ends at 25193402 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD115-13   33032
Cards
Entrez_Gene (NCBI)SNORD115-13  100033450  small nucleolar RNA, C/D box 115-13
AliasesHBII-52-13
GeneCards (Weizmann)SNORD115-13
Ensembl hg19 (Hinxton)ENSG00000273835 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000273835 [Gene_View]  chr15:25193321-25193402 [Contig_View]  SNORD115-13 [Vega]
ICGC DataPortalENSG00000273835
TCGA cBioPortalSNORD115-13
AceView (NCBI)SNORD115-13
Genatlas (Paris)SNORD115-13
WikiGenes100033450
SOURCE (Princeton)SNORD115-13
Genetics Home Reference (NIH)SNORD115-13
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD115-13  -     chr15:25193321-25193402 +  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD115-13  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblSNORD115-13 - 15q11.2 [CytoView hg19]  SNORD115-13 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBISNORD115-13 [Mapview hg19]  SNORD115-13 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD115-13
Alternative Splicing GalleryENSG00000273835
Gene ExpressionSNORD115-13 [ NCBI-GEO ]   SNORD115-13 [ EBI - ARRAY_EXPRESS ]   SNORD115-13 [ SEEK ]   SNORD115-13 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD115-13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100033450
GTEX Portal (Tissue expression)SNORD115-13
Human Protein AtlasENSG00000273835-SNORD115-13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD115-13
DMDM Disease mutations100033450
Blocks (Seattle)SNORD115-13
Human Protein Atlas [tissue]ENSG00000273835-SNORD115-13 [tissue]
Protein Interaction databases
FunCoupENSG00000273835
BioGRIDSNORD115-13
STRING (EMBL)SNORD115-13
ZODIACSNORD115-13
Ontologies - Pathways
Huge Navigator SNORD115-13 [HugePedia]
snp3D : Map Gene to Disease100033450
BioCentury BCIQSNORD115-13
ClinGenSNORD115-13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100033450
Chemical/Pharm GKB GenePA162404218
Clinical trialSNORD115-13
Miscellaneous
canSAR (ICR)SNORD115-13 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD115-13
EVEXSNORD115-13
GoPubMedSNORD115-13
iHOPSNORD115-13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:32:14 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.