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SNORD115-5 (small nucleolar RNA, C/D box 115-5)

Identity

Alias_symbol (synonym)HBII-52-5
Other alias
HGNC (Hugo) SNORD115-5
LocusID (NCBI) 100033442
Atlas_Id 73857
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 25178738 and ends at 25178819 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD115-5   33024
Cards
Entrez_Gene (NCBI)SNORD115-5  100033442  small nucleolar RNA, C/D box 115-5
AliasesHBII-52-5
GeneCards (Weizmann)SNORD115-5
Ensembl hg19 (Hinxton)ENSG00000200503 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000200503 [Gene_View]  chr15:25178738-25178819 [Contig_View]  SNORD115-5 [Vega]
ICGC DataPortalENSG00000200503
TCGA cBioPortalSNORD115-5
AceView (NCBI)SNORD115-5
Genatlas (Paris)SNORD115-5
WikiGenes100033442
SOURCE (Princeton)SNORD115-5
Genetics Home Reference (NIH)SNORD115-5
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD115-5  -     chr15:25178738-25178819 +  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD115-5  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblSNORD115-5 - 15q11.2 [CytoView hg19]  SNORD115-5 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBISNORD115-5 [Mapview hg19]  SNORD115-5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD115-5
Alternative Splicing GalleryENSG00000200503
Gene ExpressionSNORD115-5 [ NCBI-GEO ]   SNORD115-5 [ EBI - ARRAY_EXPRESS ]   SNORD115-5 [ SEEK ]   SNORD115-5 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD115-5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100033442
GTEX Portal (Tissue expression)SNORD115-5
Human Protein AtlasENSG00000200503-SNORD115-5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD115-5
DMDM Disease mutations100033442
Blocks (Seattle)SNORD115-5
Human Protein Atlas [tissue]ENSG00000200503-SNORD115-5 [tissue]
Protein Interaction databases
FunCoupENSG00000200503
BioGRIDSNORD115-5
STRING (EMBL)SNORD115-5
ZODIACSNORD115-5
Ontologies - Pathways
Huge Navigator SNORD115-5 [HugePedia]
snp3D : Map Gene to Disease100033442
BioCentury BCIQSNORD115-5
ClinGenSNNRD15-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100033442
Chemical/Pharm GKB GenePA162404251
Clinical trialSNORD115-5
Miscellaneous
canSAR (ICR)SNORD115-5 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD115-5
EVEXSNORD115-5
GoPubMedSNORD115-5
iHOPSNORD115-5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:29:22 CET 2017

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