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SNORD116-1 (small nucleolar RNA, C/D box 116-1)

Identity

Alias_symbol (synonym)HBII-85-1
Other aliasPWCR1
HGNC (Hugo) SNORD116-1
LocusID (NCBI) 100033413
Atlas_Id 73863
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 25051476 and ends at 25051572 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD116-1   33067
Cards
Entrez_Gene (NCBI)SNORD116-1  100033413  small nucleolar RNA, C/D box 116-1
AliasesHBII-85-1; PWCR1
GeneCards (Weizmann)SNORD116-1
Ensembl hg19 (Hinxton)ENSG00000207063 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000207063 [Gene_View]  chr15:25051476-25051572 [Contig_View]  SNORD116-1 [Vega]
ICGC DataPortalENSG00000207063
TCGA cBioPortalSNORD116-1
AceView (NCBI)SNORD116-1
Genatlas (Paris)SNORD116-1
WikiGenes100033413
SOURCE (Princeton)SNORD116-1
Genetics Home Reference (NIH)SNORD116-1
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD116-1  -     chr15:25051476-25051572 +  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD116-1  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblSNORD116-1 - 15q11.2 [CytoView hg19]  SNORD116-1 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBISNORD116-1 [Mapview hg19]  SNORD116-1 [Mapview hg38]
OMIM176270   605436   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD116-1
Alternative Splicing GalleryENSG00000207063
Gene ExpressionSNORD116-1 [ NCBI-GEO ]   SNORD116-1 [ EBI - ARRAY_EXPRESS ]   SNORD116-1 [ SEEK ]   SNORD116-1 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD116-1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100033413
GTEX Portal (Tissue expression)SNORD116-1
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD116-1
DMDM Disease mutations100033413
Blocks (Seattle)SNORD116-1
Human Protein AtlasENSG00000207063
Protein Interaction databases
FunCoupENSG00000207063
BioGRIDSNORD116-1
STRING (EMBL)SNORD116-1
ZODIACSNORD116-1
Ontologies - Pathways
Huge Navigator SNORD116-1 [HugePedia]
snp3D : Map Gene to Disease100033413
BioCentury BCIQSNORD116-1
ClinGenSNORD116-1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100033413
Chemical/Pharm GKB GenePA162404256
Clinical trialSNORD116-1
Miscellaneous
canSAR (ICR)SNORD116-1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD116-1
EVEXSNORD116-1
GoPubMedSNORD116-1
iHOPSNORD116-1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 11:55:18 CEST 2017

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