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SNORD116-4 (small nucleolar RNA, C/D box 116-4)

Identity

Alias_symbol (synonym)HBII-85-4
Other alias
HGNC (Hugo) SNORD116-4
LocusID (NCBI) 100033416
Atlas_Id 73887
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 25059537 and ends at 25059634 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD116-4   33070
Cards
Entrez_Gene (NCBI)SNORD116-4  100033416  small nucleolar RNA, C/D box 116-4
AliasesHBII-85-4
GeneCards (Weizmann)SNORD116-4
Ensembl hg19 (Hinxton)ENSG00000275529 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000275529 [Gene_View]  chr15:25059537-25059634 [Contig_View]  SNORD116-4 [Vega]
ICGC DataPortalENSG00000275529
TCGA cBioPortalSNORD116-4
AceView (NCBI)SNORD116-4
Genatlas (Paris)SNORD116-4
WikiGenes100033416
SOURCE (Princeton)SNORD116-4
Genetics Home Reference (NIH)SNORD116-4
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD116-4  -     chr15:25059537-25059634 +  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD116-4  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblSNORD116-4 - 15q11.2 [CytoView hg19]  SNORD116-4 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBISNORD116-4 [Mapview hg19]  SNORD116-4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD116-4
Alternative Splicing GalleryENSG00000275529
Gene ExpressionSNORD116-4 [ NCBI-GEO ]   SNORD116-4 [ EBI - ARRAY_EXPRESS ]   SNORD116-4 [ SEEK ]   SNORD116-4 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD116-4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100033416
GTEX Portal (Tissue expression)SNORD116-4
Human Protein AtlasENSG00000275529-SNORD116-4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD116-4
DMDM Disease mutations100033416
Blocks (Seattle)SNORD116-4
Human Protein Atlas [tissue]ENSG00000275529-SNORD116-4 [tissue]
Protein Interaction databases
FunCoupENSG00000275529
BioGRIDSNORD116-4
STRING (EMBL)SNORD116-4
ZODIACSNORD116-4
Ontologies - Pathways
Huge Navigator SNORD116-4 [HugePedia]
snp3D : Map Gene to Disease100033416
BioCentury BCIQSNORD116-4
ClinGenSNORD116-4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100033416
Chemical/Pharm GKB GenePA162404279
Clinical trialSNORD116-4
Miscellaneous
canSAR (ICR)SNORD116-4 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD116-4
EVEXSNORD116-4
GoPubMedSNORD116-4
iHOPSNORD116-4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Nov 20 20:14:49 CET 2017

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