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SNORD116-6 (small nucleolar RNA, C/D box 116-6)

Identity

Alias_symbol (synonym)HBII-85-6
Other alias
HGNC (Hugo) SNORD116-6
LocusID (NCBI) 100033418
Atlas_Id 73889
Location 15q11.2  [Link to chromosome band 15q11]
Location_base_pair Starts at 25065025 and ends at 25065122 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD116-6   33072
Cards
Entrez_Gene (NCBI)SNORD116-6  100033418  small nucleolar RNA, C/D box 116-6
AliasesHBII-85-6
GeneCards (Weizmann)SNORD116-6
Ensembl hg19 (Hinxton)ENSG00000207442 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000207442 [Gene_View]  chr15:25065025-25065122 [Contig_View]  SNORD116-6 [Vega]
ICGC DataPortalENSG00000207442
TCGA cBioPortalSNORD116-6
AceView (NCBI)SNORD116-6
Genatlas (Paris)SNORD116-6
WikiGenes100033418
SOURCE (Princeton)SNORD116-6
Genetics Home Reference (NIH)SNORD116-6
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD116-6  -     chr15:25065025-25065122 +  15q11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD116-6  -     15q11.2   [Description]    (hg19-Feb_2009)
EnsemblSNORD116-6 - 15q11.2 [CytoView hg19]  SNORD116-6 - 15q11.2 [CytoView hg38]
Mapping of homologs : NCBISNORD116-6 [Mapview hg19]  SNORD116-6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD116-6
Alternative Splicing GalleryENSG00000207442
Gene ExpressionSNORD116-6 [ NCBI-GEO ]   SNORD116-6 [ EBI - ARRAY_EXPRESS ]   SNORD116-6 [ SEEK ]   SNORD116-6 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD116-6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)100033418
GTEX Portal (Tissue expression)SNORD116-6
Human Protein AtlasENSG00000207442-SNORD116-6 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD116-6
DMDM Disease mutations100033418
Blocks (Seattle)SNORD116-6
Human Protein Atlas [tissue]ENSG00000207442-SNORD116-6 [tissue]
Protein Interaction databases
FunCoupENSG00000207442
BioGRIDSNORD116-6
STRING (EMBL)SNORD116-6
ZODIACSNORD116-6
Ontologies - Pathways
Huge Navigator SNORD116-6 [HugePedia]
snp3D : Map Gene to Disease100033418
BioCentury BCIQSNORD116-6
ClinGenSNORD116-6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100033418
Chemical/Pharm GKB GenePA162404281
Clinical trialSNORD116-6
Miscellaneous
canSAR (ICR)SNORD116-6 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD116-6
EVEXSNORD116-6
GoPubMedSNORD116-6
iHOPSNORD116-6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Nov 9 12:29:29 CET 2017

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