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SNORD117 (small nucleolar RNA, C/D box 117)

Identity

Alias_symbol (synonym)U83
Other alias
HGNC (Hugo) SNORD117
LocusID (NCBI) 692233
Atlas_Id 73893
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31536374 and ends at 31536449 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD117   32742
Cards
Entrez_Gene (NCBI)SNORD117  692233  small nucleolar RNA, C/D box 117
AliasesU83
GeneCards (Weizmann)SNORD117
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:31536374-31536449 [Contig_View]  SNORD117 [Vega]
TCGA cBioPortalSNORD117
AceView (NCBI)SNORD117
Genatlas (Paris)SNORD117
WikiGenes692233
SOURCE (Princeton)SNORD117
Genetics Home Reference (NIH)SNORD117
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD117  -     chr6:31536374-31536449 -  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD117  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblSNORD117 - 6p21.33 [CytoView hg19]  SNORD117 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBISNORD117 [Mapview hg19]  SNORD117 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ243200
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167246 NT_167247 NT_167248 NT_167249
Consensus coding sequences : CCDS (NCBI)SNORD117
Gene ExpressionSNORD117 [ NCBI-GEO ]   SNORD117 [ EBI - ARRAY_EXPRESS ]   SNORD117 [ SEEK ]   SNORD117 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD117 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)692233
GTEX Portal (Tissue expression)SNORD117
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD117
DMDM Disease mutations692233
Blocks (Seattle)SNORD117
Protein Interaction databases
BioGRIDSNORD117
STRING (EMBL)SNORD117
ZODIACSNORD117
Ontologies - Pathways
Huge Navigator SNORD117 [HugePedia]
snp3D : Map Gene to Disease692233
BioCentury BCIQSNORD117
ClinGenSNORD117
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD692233
Chemical/Pharm GKB GenePA145007735
Clinical trialSNORD117
Miscellaneous
canSAR (ICR)SNORD117 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD117
EVEXSNORD117
GoPubMedSNORD117
iHOPSNORD117
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:31:34 CEST 2018

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