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SNORD139 (small nucleolar RNA, C/D box 139)

Identity

Other aliasRNU86
U82
U86
HGNC (Hugo) SNORD139
LocusID (NCBI) 116936
Atlas_Id 78389
Location 22q13.1  [Link to chromosome band 22q13]
Location_base_pair Starts at 39316842 and ends at 39316896 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD139   50421
Cards
Entrez_Gene (NCBI)SNORD139  116936  small nucleolar RNA, C/D box 139
AliasesRNU86; U82; U86
GeneCards (Weizmann)SNORD139
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chr22:39316842-39316896 [Contig_View]  SNORD139 [Vega]
TCGA cBioPortalSNORD139
AceView (NCBI)SNORD139
Genatlas (Paris)SNORD139
WikiGenes116936
SOURCE (Princeton)SNORD139
Genetics Home Reference (NIH)SNORD139
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD139  -     chr22:39316842-39316896 -  22q13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD139  -     22q13.1   [Description]    (hg19-Feb_2009)
EnsemblSNORD139 - 22q13.1 [CytoView hg19]  SNORD139 - 22q13.1 [CytoView hg38]
Mapping of homologs : NCBISNORD139 [Mapview hg19]  SNORD139 [Mapview hg38]
OMIM611069   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD139
Gene ExpressionSNORD139 [ NCBI-GEO ]   SNORD139 [ EBI - ARRAY_EXPRESS ]   SNORD139 [ SEEK ]   SNORD139 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD139 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)116936
GTEX Portal (Tissue expression)SNORD139
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD139
DMDM Disease mutations116936
Blocks (Seattle)SNORD139
Protein Interaction databases
BioGRIDSNORD139
STRING (EMBL)SNORD139
ZODIACSNORD139
Ontologies - Pathways
Huge Navigator SNORD139 [HugePedia]
snp3D : Map Gene to Disease116936
BioCentury BCIQSNORD139
ClinGenSNORD139
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD116936
Clinical trialSNORD139
Miscellaneous
canSAR (ICR)SNORD139 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD139
EVEXSNORD139
GoPubMedSNORD139
iHOPSNORD139
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:44:23 CET 2017

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