Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNORD13I (small nucleolar RNA, C/D box 13I)

Identity

Other alias-
HGNC (Hugo) SNORD13I
LocusID (NCBI) 109616988
Atlas_Id 79435
Location 11q22.1  [Link to chromosome band 11q22]
Location_base_pair Starts at 100934274 and ends at 100934378 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SNORD13I   52248
Cards
Entrez_Gene (NCBI)SNORD13I  109616988  small nucleolar RNA, C/D box 13I
Aliases
GeneCards (Weizmann)SNORD13I
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr11:100934274-100934378 [Contig_View]  SNORD13I [Vega]
TCGA cBioPortalSNORD13I
AceView (NCBI)SNORD13I
Genatlas (Paris)SNORD13I
WikiGenes109616988
SOURCE (Princeton)SNORD13I
Genetics Home Reference (NIH)SNORD13I
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD13I  -     chr11:100934274-100934378 +  11q22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD13I  -     11q22.1   [Description]    (hg19-Feb_2009)
EnsemblSNORD13I - 11q22.1 [CytoView hg19]  SNORD13I - 11q22.1 [CytoView hg38]
Mapping of homologs : NCBISNORD13I [Mapview hg19]  SNORD13I [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD13I
Gene ExpressionSNORD13I [ NCBI-GEO ]   SNORD13I [ EBI - ARRAY_EXPRESS ]   SNORD13I [ SEEK ]   SNORD13I [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD13I [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109616988
GTEX Portal (Tissue expression)SNORD13I
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD13I
DMDM Disease mutations109616988
Blocks (Seattle)SNORD13I
Protein Interaction databases
BioGRIDSNORD13I
STRING (EMBL)SNORD13I
ZODIACSNORD13I
Ontologies - Pathways
Huge Navigator SNORD13I [HugePedia]
snp3D : Map Gene to Disease109616988
BioCentury BCIQSNORD13I
ClinGenSNORD13I
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109616988
Clinical trialSNORD13I
Miscellaneous
canSAR (ICR)SNORD13I (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD13I
EVEXSNORD13I
GoPubMedSNORD13I
iHOPSNORD13I
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:31:42 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.