Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

SNORD28 (small nucleolar RNA, C/D box 28)

Identity

Alias_namesRNU28
RNA, U28 small nucleolar
Alias_symbol (synonym)U28
SNORD28A
Other alias
HGNC (Hugo) SNORD28
LocusID (NCBI) 9300
Atlas_Id 73929
Location 11q12.3  [Link to chromosome band 11q12]
Location_base_pair Starts at 62854621 and ends at 62854695 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)		Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)SNORD28   10150
Cards
Entrez_Gene (NCBI)SNORD28  9300  small nucleolar RNA, C/D box 28
AliasesRNU28; SNORD28A; U28
GeneCards (Weizmann)SNORD28
Ensembl hg19 (Hinxton)ENSG00000274544 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000274544 [Gene_View]  ENSG00000274544 [Sequence]  chr11:62854621-62854695 [Contig_View]  SNORD28 [Vega]
ICGC DataPortalENSG00000274544
TCGA cBioPortalSNORD28
AceView (NCBI)SNORD28
Genatlas (Paris)SNORD28
WikiGenes9300
SOURCE (Princeton)SNORD28
Genetics Home Reference (NIH)SNORD28
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD28  -     chr11:62854621-62854695 -  11q12.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD28  -     11q12.3   [Description]    (hg19-Feb_2009)
EnsemblSNORD28 - 11q12.3 [CytoView hg19]  SNORD28 - 11q12.3 [CytoView hg38]
Mapping of homologs : NCBISNORD28 [Mapview hg19]  SNORD28 [Mapview hg38]
OMIM603227   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD28
Alternative Splicing GalleryENSG00000274544
Gene ExpressionSNORD28 [ NCBI-GEO ]   SNORD28 [ EBI - ARRAY_EXPRESS ]   SNORD28 [ SEEK ]   SNORD28 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD28 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)9300
GTEX Portal (Tissue expression)SNORD28
Human Protein AtlasENSG00000274544-SNORD28 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD28
DMDM Disease mutations9300
Blocks (Seattle)SNORD28
Human Protein Atlas [tissue]ENSG00000274544-SNORD28 [tissue]
Protein Interaction databases
FunCoupENSG00000274544
BioGRIDSNORD28
STRING (EMBL)SNORD28
ZODIACSNORD28
Ontologies - Pathways
Huge Navigator SNORD28 [HugePedia]
snp3D : Map Gene to Disease9300
BioCentury BCIQSNORD28
ClinGenSNORD28
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9300
Chemical/Pharm GKB GenePA34516
Clinical trialSNORD28
Miscellaneous
canSAR (ICR)SNORD28 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD28
EVEXSNORD28
GoPubMedSNORD28
iHOPSNORD28
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:31:56 CEST 2018
Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.