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SNORD28B (small nucleolar RNA, C/D box 28B)

Identity

Other alias-
HGNC (Hugo) SNORD28B
LocusID (NCBI) 109617011
Atlas_Id 79781
Location 6q25.3  [Link to chromosome band 6q25]
Location_base_pair Starts at 156378750 and ends at 156378823 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD28B   52225
Cards
Entrez_Gene (NCBI)SNORD28B  109617011  small nucleolar RNA, C/D box 28B
Aliases
GeneCards (Weizmann)SNORD28B
Ensembl hg19 (Hinxton)ENSG00000212295 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000212295 [Gene_View]  ENSG00000212295 [Sequence]  chr6:156378750-156378823 [Contig_View]  SNORD28B [Vega]
ICGC DataPortalENSG00000212295
TCGA cBioPortalSNORD28B
AceView (NCBI)SNORD28B
Genatlas (Paris)SNORD28B
WikiGenes109617011
SOURCE (Princeton)SNORD28B
Genetics Home Reference (NIH)SNORD28B
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD28B  -     chr6:156378750-156378823 +  6q25.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD28B  -     6q25.3   [Description]    (hg19-Feb_2009)
EnsemblSNORD28B - 6q25.3 [CytoView hg19]  SNORD28B - 6q25.3 [CytoView hg38]
Mapping of homologs : NCBISNORD28B [Mapview hg19]  SNORD28B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD28B
Alternative Splicing GalleryENSG00000212295
Gene ExpressionSNORD28B [ NCBI-GEO ]   SNORD28B [ EBI - ARRAY_EXPRESS ]   SNORD28B [ SEEK ]   SNORD28B [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD28B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109617011
GTEX Portal (Tissue expression)SNORD28B
Human Protein AtlasENSG00000212295-SNORD28B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD28B
DMDM Disease mutations109617011
Blocks (Seattle)SNORD28B
Human Protein Atlas [tissue]ENSG00000212295-SNORD28B [tissue]
Protein Interaction databases
FunCoupENSG00000212295
BioGRIDSNORD28B
STRING (EMBL)SNORD28B
ZODIACSNORD28B
Ontologies - Pathways
Huge Navigator SNORD28B [HugePedia]
snp3D : Map Gene to Disease109617011
BioCentury BCIQSNORD28B
ClinGenSNORD28B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109617011
Clinical trialSNORD28B
Miscellaneous
canSAR (ICR)SNORD28B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD28B
EVEXSNORD28B
GoPubMedSNORD28B
iHOPSNORD28B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:31:57 CEST 2018

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