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SNORD38C (small nucleolar RNA, C/D box 38C)

Identity

Other alias-
HGNC (Hugo) SNORD38C
LocusID (NCBI) 109617024
Atlas_Id 79075
Location 3p21.1  [Link to chromosome band 3p21]
Location_base_pair Starts at 53333061 and ends at 53333127 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD38C   52227
Cards
Entrez_Gene (NCBI)SNORD38C  109617024  small nucleolar RNA, C/D box 38C
Aliases
GeneCards (Weizmann)SNORD38C
Ensembl hg19 (Hinxton)ENSG00000207109 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000207109 [Gene_View]  ENSG00000207109 [Sequence]  chr3:53333061-53333127 [Contig_View]  SNORD38C [Vega]
ICGC DataPortalENSG00000207109
TCGA cBioPortalSNORD38C
AceView (NCBI)SNORD38C
Genatlas (Paris)SNORD38C
WikiGenes109617024
SOURCE (Princeton)SNORD38C
Genetics Home Reference (NIH)SNORD38C
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD38C  -     chr3:53333061-53333127 -  3p21.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD38C  -     3p21.1   [Description]    (hg19-Feb_2009)
EnsemblSNORD38C - 3p21.1 [CytoView hg19]  SNORD38C - 3p21.1 [CytoView hg38]
Mapping of homologs : NCBISNORD38C [Mapview hg19]  SNORD38C [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD38C
Alternative Splicing GalleryENSG00000207109
Gene ExpressionSNORD38C [ NCBI-GEO ]   SNORD38C [ EBI - ARRAY_EXPRESS ]   SNORD38C [ SEEK ]   SNORD38C [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD38C [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109617024
GTEX Portal (Tissue expression)SNORD38C
Human Protein AtlasENSG00000207109-SNORD38C [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD38C
DMDM Disease mutations109617024
Blocks (Seattle)SNORD38C
Human Protein Atlas [tissue]ENSG00000207109-SNORD38C [tissue]
Protein Interaction databases
FunCoupENSG00000207109
BioGRIDSNORD38C
STRING (EMBL)SNORD38C
ZODIACSNORD38C
Ontologies - Pathways
Huge Navigator SNORD38C [HugePedia]
snp3D : Map Gene to Disease109617024
BioCentury BCIQSNORD38C
ClinGenSNORD38C
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109617024
Clinical trialSNORD38C
Miscellaneous
canSAR (ICR)SNORD38C (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD38C
EVEXSNORD38C
GoPubMedSNORD38C
iHOPSNORD38C
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Jul 30 14:32:00 CEST 2018

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