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SNORD3D (small nucleolar RNA, C/D box 3D)

Identity

Alias_symbol (synonym)U3-4
RNU3-4
Other alias
HGNC (Hugo) SNORD3D
LocusID (NCBI) 780854
Atlas_Id 80113
Location 17p11.2  [Link to chromosome band 17p11]
Location_base_pair Starts at 19112420 and ends at 19112636 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD3D   33192
Cards
Entrez_Gene (NCBI)SNORD3D  780854  small nucleolar RNA, C/D box 3D
AliasesRNU3-4; U3-4
GeneCards (Weizmann)SNORD3D
Ensembl hg19 (Hinxton)ENSG00000277947 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000277947 [Gene_View]  chr17:19112420-19112636 [Contig_View]  SNORD3D [Vega]
ICGC DataPortalENSG00000277947
TCGA cBioPortalSNORD3D
AceView (NCBI)SNORD3D
Genatlas (Paris)SNORD3D
WikiGenes780854
SOURCE (Princeton)SNORD3D
Genetics Home Reference (NIH)SNORD3D
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD3D  -     chr17:19112420-19112636 -  17p11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD3D  -     17p11.2   [Description]    (hg19-Feb_2009)
EnsemblSNORD3D - 17p11.2 [CytoView hg19]  SNORD3D - 17p11.2 [CytoView hg38]
Mapping of homologs : NCBISNORD3D [Mapview hg19]  SNORD3D [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD3D
Alternative Splicing GalleryENSG00000277947
Gene ExpressionSNORD3D [ NCBI-GEO ]   SNORD3D [ EBI - ARRAY_EXPRESS ]   SNORD3D [ SEEK ]   SNORD3D [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD3D [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)780854
GTEX Portal (Tissue expression)SNORD3D
Human Protein AtlasENSG00000277947-SNORD3D [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD3D
DMDM Disease mutations780854
Blocks (Seattle)SNORD3D
Human Protein Atlas [tissue]ENSG00000277947-SNORD3D [tissue]
Protein Interaction databases
FunCoupENSG00000277947
BioGRIDSNORD3D
STRING (EMBL)SNORD3D
ZODIACSNORD3D
Ontologies - Pathways
Huge Navigator SNORD3D [HugePedia]
snp3D : Map Gene to Disease780854
BioCentury BCIQSNORD3D
ClinGenSNORD3D
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD780854
Chemical/Pharm GKB GenePA162404301
Clinical trialSNORD3D
Miscellaneous
canSAR (ICR)SNORD3D (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD3D
EVEXSNORD3D
GoPubMedSNORD3D
iHOPSNORD3D
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:36:56 CET 2017

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