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SNORD3J (small nucleolar RNA, C/D box 3J)

Identity

Other alias-
HGNC (Hugo) SNORD3J
LocusID (NCBI) 109616985
Atlas_Id 80207
Location 10q11.21  [Link to chromosome band 10q11]
Location_base_pair Starts at 43417250 and ends at 43417440 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD3J   52243
Cards
Entrez_Gene (NCBI)SNORD3J  109616985  small nucleolar RNA, C/D box 3J
Aliases
GeneCards (Weizmann)SNORD3J
Ensembl hg19 (Hinxton)ENSG00000221400 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000221400 [Gene_View]  chr10:43417250-43417440 [Contig_View]  SNORD3J [Vega]
ICGC DataPortalENSG00000221400
TCGA cBioPortalSNORD3J
AceView (NCBI)SNORD3J
Genatlas (Paris)SNORD3J
WikiGenes109616985
SOURCE (Princeton)SNORD3J
Genetics Home Reference (NIH)SNORD3J
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD3J  -     chr10:43417250-43417440 -  10q11.21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD3J  -     10q11.21   [Description]    (hg19-Feb_2009)
EnsemblSNORD3J - 10q11.21 [CytoView hg19]  SNORD3J - 10q11.21 [CytoView hg38]
Mapping of homologs : NCBISNORD3J [Mapview hg19]  SNORD3J [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD3J
Alternative Splicing GalleryENSG00000221400
Gene ExpressionSNORD3J [ NCBI-GEO ]   SNORD3J [ EBI - ARRAY_EXPRESS ]   SNORD3J [ SEEK ]   SNORD3J [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD3J [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109616985
GTEX Portal (Tissue expression)SNORD3J
Human Protein AtlasENSG00000221400-SNORD3J [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD3J
DMDM Disease mutations109616985
Blocks (Seattle)SNORD3J
Human Protein Atlas [tissue]ENSG00000221400-SNORD3J [tissue]
Protein Interaction databases
FunCoupENSG00000221400
BioGRIDSNORD3J
STRING (EMBL)SNORD3J
ZODIACSNORD3J
Ontologies - Pathways
Huge Navigator SNORD3J [HugePedia]
snp3D : Map Gene to Disease109616985
BioCentury BCIQSNORD3J
ClinGenSNORD3J
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109616985
Clinical trialSNORD3J
Miscellaneous
canSAR (ICR)SNORD3J (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD3J
EVEXSNORD3J
GoPubMedSNORD3J
iHOPSNORD3J
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:22:37 CET 2017

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