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SNORD48 (small nucleolar RNA, C/D box 48)

Identity

Alias_namesRNU48
RNA, U48 small nuclear
Alias_symbol (synonym)U48
Other alias
HGNC (Hugo) SNORD48
LocusID (NCBI) 26801
Atlas_Id 73955
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31835263 and ends at 31835326 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD48   10188
Cards
Entrez_Gene (NCBI)SNORD48  26801  small nucleolar RNA, C/D box 48
AliasesRNU48; U48
GeneCards (Weizmann)SNORD48
Ensembl hg19 (Hinxton)ENSG00000201823 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000201823 [Gene_View]  ENSG00000201823 [Sequence]  chr6:31835263-31835326 [Contig_View]  SNORD48 [Vega]
ICGC DataPortalENSG00000201823
TCGA cBioPortalSNORD48
AceView (NCBI)SNORD48
Genatlas (Paris)SNORD48
WikiGenes26801
SOURCE (Princeton)SNORD48
Genetics Home Reference (NIH)SNORD48
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD48  -     chr6:31835263-31835326 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD48  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblSNORD48 - 6p21.33 [CytoView hg19]  SNORD48 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBISNORD48 [Mapview hg19]  SNORD48 [Mapview hg38]
Gene and transcription
Genbank (Entrez)X96648
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167248
Consensus coding sequences : CCDS (NCBI)SNORD48
Alternative Splicing GalleryENSG00000201823
Gene ExpressionSNORD48 [ NCBI-GEO ]   SNORD48 [ EBI - ARRAY_EXPRESS ]   SNORD48 [ SEEK ]   SNORD48 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD48 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)26801
GTEX Portal (Tissue expression)SNORD48
Human Protein AtlasENSG00000201823-SNORD48 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD48
DMDM Disease mutations26801
Blocks (Seattle)SNORD48
Human Protein Atlas [tissue]ENSG00000201823-SNORD48 [tissue]
Protein Interaction databases
FunCoupENSG00000201823
BioGRIDSNORD48
STRING (EMBL)SNORD48
ZODIACSNORD48
Ontologies - Pathways
Huge Navigator SNORD48 [HugePedia]
snp3D : Map Gene to Disease26801
BioCentury BCIQSNORD48
ClinGenSNORD48
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26801
Chemical/Pharm GKB GenePA34555
Clinical trialSNORD48
Miscellaneous
canSAR (ICR)SNORD48 (select the gene name)
Probes
Litterature
PubMed4 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD48
EVEXSNORD48
GoPubMedSNORD48
iHOPSNORD48
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:32:06 CEST 2018

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