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SNORD5 (small nucleolar RNA, C/D box 5)

Identity

Alias (NCBI)mgh28S-2410
HGNC (Hugo) SNORD5
HGNC Alias symbmgh28S-2410
LocusID (NCBI) 692072
Atlas_Id 73960
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 93733228 and ends at 93733300 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)SNORD5   32702
Cards
Entrez_Gene (NCBI)SNORD5    small nucleolar RNA, C/D box 5
Aliasesmgh28S-2410
GeneCards (Weizmann)SNORD5
Ensembl hg19 (Hinxton)ENSG00000239195 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239195 [Gene_View]  ENSG00000239195 [Sequence]  chr11:93733228-93733300 [Contig_View]  SNORD5 [Vega]
ICGC DataPortalENSG00000239195
TCGA cBioPortalSNORD5
AceView (NCBI)SNORD5
Genatlas (Paris)SNORD5
SOURCE (Princeton)SNORD5
Genetics Home Reference (NIH)SNORD5
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD5  -     chr11:93733228-93733300 -  11q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD5  -     11q21   [Description]    (hg19-Feb_2009)
GoldenPathSNORD5 - 11q21 [CytoView hg19]  SNORD5 - 11q21 [CytoView hg38]
ImmunoBaseENSG00000239195
genome Data Viewer NCBISNORD5 [Mapview hg19]  
Gene and transcription
Genbank (Entrez)AJ609488
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD5
Alternative Splicing GalleryENSG00000239195
Gene ExpressionSNORD5 [ NCBI-GEO ]   SNORD5 [ EBI - ARRAY_EXPRESS ]   SNORD5 [ SEEK ]   SNORD5 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD5 [ Firebrowse - Broad ]
GenevisibleExpression of SNORD5 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)692072
GTEX Portal (Tissue expression)SNORD5
Human Protein AtlasENSG00000239195-SNORD5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD5
Blocks (Seattle)SNORD5
Human Protein Atlas [tissue]ENSG00000239195-SNORD5 [tissue]
Protein Interaction databases
BioGRIDSNORD5
STRING (EMBL)SNORD5
ZODIACSNORD5
Ontologies - Pathways
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD5
EVEXSNORD5
GoPubMedSNORD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Dec 5 17:29:31 CET 2020

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