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SNORD5 (small nucleolar RNA, C/D box 5)

Identity

Alias_symbol (synonym)mgh28S-2410
Other alias
HGNC (Hugo) SNORD5
LocusID (NCBI) 692072
Atlas_Id 73960
Location 11q21  [Link to chromosome band 11q21]
Location_base_pair Starts at 93733228 and ends at 93733300 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD5   32702
Cards
Entrez_Gene (NCBI)SNORD5  692072  small nucleolar RNA, C/D box 5
Aliasesmgh28S-2410
GeneCards (Weizmann)SNORD5
Ensembl hg19 (Hinxton)ENSG00000239195 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000239195 [Gene_View]  chr11:93733228-93733300 [Contig_View]  SNORD5 [Vega]
ICGC DataPortalENSG00000239195
TCGA cBioPortalSNORD5
AceView (NCBI)SNORD5
Genatlas (Paris)SNORD5
WikiGenes692072
SOURCE (Princeton)SNORD5
Genetics Home Reference (NIH)SNORD5
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD5  -     chr11:93733228-93733300 -  11q21   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD5  -     11q21   [Description]    (hg19-Feb_2009)
EnsemblSNORD5 - 11q21 [CytoView hg19]  SNORD5 - 11q21 [CytoView hg38]
Mapping of homologs : NCBISNORD5 [Mapview hg19]  SNORD5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AJ609488
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD5
Alternative Splicing GalleryENSG00000239195
Gene ExpressionSNORD5 [ NCBI-GEO ]   SNORD5 [ EBI - ARRAY_EXPRESS ]   SNORD5 [ SEEK ]   SNORD5 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)692072
GTEX Portal (Tissue expression)SNORD5
Human Protein AtlasENSG00000239195-SNORD5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD5
DMDM Disease mutations692072
Blocks (Seattle)SNORD5
Human Protein Atlas [tissue]ENSG00000239195-SNORD5 [tissue]
Protein Interaction databases
FunCoupENSG00000239195
BioGRIDSNORD5
STRING (EMBL)SNORD5
ZODIACSNORD5
Ontologies - Pathways
Huge Navigator SNORD5 [HugePedia]
snp3D : Map Gene to Disease692072
BioCentury BCIQSNORD5
ClinGenSNORD5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD692072
Chemical/Pharm GKB GenePA145007803
Clinical trialSNORD5
Miscellaneous
canSAR (ICR)SNORD5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD5
EVEXSNORD5
GoPubMedSNORD5
iHOPSNORD5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Nov 20 20:15:26 CET 2017

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