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SNORD50A (small nucleolar RNA, C/D box 50A)

Identity

Alias_namesRNU50
RNA
Alias_symbol (synonym)U50
Other alias
HGNC (Hugo) SNORD50A
LocusID (NCBI) 26799
Atlas_Id 50114
Location 6q14.3  [Link to chromosome band 6q14]
Location_base_pair Starts at 85677294 and ends at 85677368 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD50A   10200
Cards
Entrez_Gene (NCBI)SNORD50A  26799  small nucleolar RNA, C/D box 50A
AliasesRNU50; U50
GeneCards (Weizmann)SNORD50A
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]   [Sequence]  chr6:85677294-85677368 [Contig_View]  SNORD50A [Vega]
TCGA cBioPortalSNORD50A
AceView (NCBI)SNORD50A
Genatlas (Paris)SNORD50A
WikiGenes26799
SOURCE (Princeton)SNORD50A
Genetics Home Reference (NIH)SNORD50A
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD50A  -     chr6:85677294-85677368 -  6q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD50A  -     6q14.3   [Description]    (hg19-Feb_2009)
EnsemblSNORD50A - 6q14.3 [CytoView hg19]  SNORD50A - 6q14.3 [CytoView hg38]
Mapping of homologs : NCBISNORD50A [Mapview hg19]  SNORD50A [Mapview hg38]
OMIM613117   
Gene and transcription
Genbank (Entrez)X96662
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD50A
Gene ExpressionSNORD50A [ NCBI-GEO ]   SNORD50A [ EBI - ARRAY_EXPRESS ]   SNORD50A [ SEEK ]   SNORD50A [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD50A [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)26799
GTEX Portal (Tissue expression)SNORD50A
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD50A
DMDM Disease mutations26799
Blocks (Seattle)SNORD50A
Protein Interaction databases
BioGRIDSNORD50A
STRING (EMBL)SNORD50A
ZODIACSNORD50A
Ontologies - Pathways
Huge Navigator SNORD50A [HugePedia]
snp3D : Map Gene to Disease26799
BioCentury BCIQSNORD50A
ClinGenSNORD50A
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26799
Chemical/Pharm GKB GenePA34567
Clinical trialSNORD50A
Miscellaneous
canSAR (ICR)SNORD50A (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD50A
EVEXSNORD50A
GoPubMedSNORD50A
iHOPSNORD50A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 11:40:54 CET 2018

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