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SNORD52 (small nucleolar RNA, C/D box 52)

Identity

Alias_namesRNU52
RNA, U52 small nuclear
Alias_symbol (synonym)U52
Other alias
HGNC (Hugo) SNORD52
LocusID (NCBI) 26797
Atlas_Id 73963
Location 6p21.33  [Link to chromosome band 6p21]
Location_base_pair Starts at 31837076 and ends at 31837139 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD52   10202
Cards
Entrez_Gene (NCBI)SNORD52  26797  small nucleolar RNA, C/D box 52
AliasesRNU52; U52
GeneCards (Weizmann)SNORD52
Ensembl hg19 (Hinxton)ENSG00000201754 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000201754 [Gene_View]  ENSG00000201754 [Sequence]  chr6:31837076-31837139 [Contig_View]  SNORD52 [Vega]
ICGC DataPortalENSG00000201754
TCGA cBioPortalSNORD52
AceView (NCBI)SNORD52
Genatlas (Paris)SNORD52
WikiGenes26797
SOURCE (Princeton)SNORD52
Genetics Home Reference (NIH)SNORD52
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD52  -     chr6:31837076-31837139 +  6p21.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD52  -     6p21.33   [Description]    (hg19-Feb_2009)
EnsemblSNORD52 - 6p21.33 [CytoView hg19]  SNORD52 - 6p21.33 [CytoView hg38]
Mapping of homologs : NCBISNORD52 [Mapview hg19]  SNORD52 [Mapview hg38]
Gene and transcription
Genbank (Entrez)X96651
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)NC_000006 NC_018917 NT_113891 NT_167244 NT_167245 NT_167248
Consensus coding sequences : CCDS (NCBI)SNORD52
Alternative Splicing GalleryENSG00000201754
Gene ExpressionSNORD52 [ NCBI-GEO ]   SNORD52 [ EBI - ARRAY_EXPRESS ]   SNORD52 [ SEEK ]   SNORD52 [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD52 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)26797
GTEX Portal (Tissue expression)SNORD52
Human Protein AtlasENSG00000201754-SNORD52 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD52
DMDM Disease mutations26797
Blocks (Seattle)SNORD52
Human Protein Atlas [tissue]ENSG00000201754-SNORD52 [tissue]
Protein Interaction databases
FunCoupENSG00000201754
BioGRIDSNORD52
STRING (EMBL)SNORD52
ZODIACSNORD52
Ontologies - Pathways
Huge Navigator SNORD52 [HugePedia]
snp3D : Map Gene to Disease26797
BioCentury BCIQSNORD52
ClinGenSNORD52
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD26797
Chemical/Pharm GKB GenePA34569
Clinical trialSNORD52
Miscellaneous
canSAR (ICR)SNORD52 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD52
EVEXSNORD52
GoPubMedSNORD52
iHOPSNORD52
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Jul 30 14:32:08 CEST 2018

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