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SNORD53B (small nucleolar RNA, C/D box 53B)

Identity

Other alias-
HGNC (Hugo) SNORD53B
LocusID (NCBI) 109617012
Atlas_Id 79349
Location 2p23.2  [Link to chromosome band 2p23]
Location_base_pair Starts at 28927983 and ends at 28928060 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)SNORD53B   52229
Cards
Entrez_Gene (NCBI)SNORD53B  109617012  small nucleolar RNA, C/D box 53B
Aliases
GeneCards (Weizmann)SNORD53B
Ensembl hg19 (Hinxton)ENSG00000265706 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000265706 [Gene_View]  chr2:28927983-28928060 [Contig_View]  SNORD53B [Vega]
ICGC DataPortalENSG00000265706
TCGA cBioPortalSNORD53B
AceView (NCBI)SNORD53B
Genatlas (Paris)SNORD53B
WikiGenes109617012
SOURCE (Princeton)SNORD53B
Genetics Home Reference (NIH)SNORD53B
Genomic and cartography
GoldenPath hg38 (UCSC)SNORD53B  -     chr2:28927983-28928060 +  2p23.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)SNORD53B  -     2p23.2   [Description]    (hg19-Feb_2009)
EnsemblSNORD53B - 2p23.2 [CytoView hg19]  SNORD53B - 2p23.2 [CytoView hg38]
Mapping of homologs : NCBISNORD53B [Mapview hg19]  SNORD53B [Mapview hg38]
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)SNORD53B
Alternative Splicing GalleryENSG00000265706
Gene ExpressionSNORD53B [ NCBI-GEO ]   SNORD53B [ EBI - ARRAY_EXPRESS ]   SNORD53B [ SEEK ]   SNORD53B [ MEM ]
Gene Expression Viewer (FireBrowse)SNORD53B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)109617012
GTEX Portal (Tissue expression)SNORD53B
Human Protein AtlasENSG00000265706-SNORD53B [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)SNORD53B
DMDM Disease mutations109617012
Blocks (Seattle)SNORD53B
Human Protein Atlas [tissue]ENSG00000265706-SNORD53B [tissue]
Protein Interaction databases
FunCoupENSG00000265706
BioGRIDSNORD53B
STRING (EMBL)SNORD53B
ZODIACSNORD53B
Ontologies - Pathways
Huge Navigator SNORD53B [HugePedia]
snp3D : Map Gene to Disease109617012
BioCentury BCIQSNORD53B
ClinGenSNORD53B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD109617012
Clinical trialSNORD53B
Miscellaneous
canSAR (ICR)SNORD53B (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineSNORD53B
EVEXSNORD53B
GoPubMedSNORD53B
iHOPSNORD53B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 21 13:06:26 CET 2017

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